Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021435205.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1912
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29


Found at i:1836 original size:65 final size:65

Alignment explanation


    Indices: 1728--1856  Score: 222
    Period size: 65  Copynumber: 2.0  Consensus size: 65

       1718 TTGAGTTATG

                        *                         *                          
       1728 TAAGATTAAAATTCCATAGTTTCCATCTTGACTAACGCGTGGCTATGAGAAAATTGGTGTAGCTA
          1 TAAGATTAAAATGCCATAGTTTCCATCTTGACTAACGCATGGCTATGAGAAAATTGGTGTAGCTA

                             *           *                                  
       1793 TAAGATTAAAATGCCATGGTTTCCATCTTTACTAACGCATGGCTATGAGAAAATTGGTGTAGCT
          1 TAAGATTAAAATGCCATAGTTTCCATCTTGACTAACGCATGGCTATGAGAAAATTGGTGTAGCT

       1857 TTGTAGTTCA


Statistics
Matches: 60,  Mismatches: 4, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  65   60  1.00

ACGTcount: A:0.32, C:0.16, G:0.20, T:0.33


Consensus pattern (65 bp):   
TAAGATTAAAATGCCATAGTTTCCATCTTGACTAACGCATGGCTATGAGAAAATTGGTGTAGCTA
Done.