Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021436459.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1905
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:31 original size:13 final size:13

Alignment explanation


    Indices: 15--54  Score: 53
    Period size: 13  Copynumber: 2.9  Consensus size: 13

          5 TTATTTGGAG

                       * 
         15 TTTTTTTTTAACT
          1 TTTTTTTTTAAAT

                          
         28 TTTTTTTTTAAAAT
          1 TTTTTTTTT-AAAT

                         
         42 TTTATTTTTTAAA
          1 TTT-TTTTTTAAA

         55 AAAATTATTT


Statistics
Matches: 24,  Mismatches: 1, Indels: 3
        0.86            0.04        0.11

Matches are distributed among these distances:
  13    9  0.38
  14    9  0.38
  15    6  0.25

ACGTcount: A:0.25, C:0.03, G:0.00, T:0.72


Consensus pattern (13 bp):   
TTTTTTTTTAAAT

Found at i:49 original size:15 final size:14

Alignment explanation


    Indices: 15--55  Score: 57
    Period size: 15  Copynumber: 2.9  Consensus size: 14

          5 TTATTTGGAG

                        * 
         15 TTTTTTTTT-AACT
          1 TTTTTTTTTAAAAT

                          
         28 TTTTTTTTTAAAAT
          1 TTTTTTTTTAAAAT

                          
         42 TTTATTTTTTAAAA
          1 TTT-TTTTTTAAAA

         56 AAATTATTTT


Statistics
Matches: 25,  Mismatches: 1, Indels: 2
        0.89            0.04        0.07

Matches are distributed among these distances:
  13    9  0.36
  14    6  0.24
  15   10  0.40

ACGTcount: A:0.27, C:0.02, G:0.00, T:0.71


Consensus pattern (14 bp):   
TTTTTTTTTAAAAT

Found at i:49 original size:17 final size:16

Alignment explanation


    Indices: 30--72  Score: 59
    Period size: 16  Copynumber: 2.7  Consensus size: 16

         20 TTTTAACTTT

                       **   
         30 TTTTTTTAAAATTTTA
          1 TTTTTTTAAAAAATTA

                  *         
         46 TTTTTTAAAAAAATTA
          1 TTTTTTTAAAAAATTA

                       
         62 TTTTTTTAAAA
          1 TTTTTTTAAAA

         73 GCTTCTAACA


Statistics
Matches: 23,  Mismatches: 4, Indels: 0
        0.85            0.15        0.00

Matches are distributed among these distances:
  16   23  1.00

ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60


Consensus pattern (16 bp):   
TTTTTTTAAAAAATTA
Done.