Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021437731.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2632
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26


Found at i:121 original size:5 final size:5

Alignment explanation


    Indices: 113--146  Score: 50
    Period size: 5  Copynumber: 6.6  Consensus size: 5

        103 GAAAGATCAG

                                      *             
        113 AAAGA AAAGCA AAAGA AAAGA AGAGA AAAGA AAA
          1 AAAGA AAAG-A AAAGA AAAGA AAAGA AAAGA AAA

        147 TCTTGGAGCT


Statistics
Matches: 26,  Mismatches: 2, Indels: 2
        0.87            0.07        0.07

Matches are distributed among these distances:
   5   21  0.81
   6    5  0.19

ACGTcount: A:0.76, C:0.03, G:0.21, T:0.00


Consensus pattern (5 bp):   
AAAGA

Found at i:699 original size:48 final size:49

Alignment explanation


    Indices: 647--752  Score: 151
    Period size: 51  Copynumber: 2.1  Consensus size: 49

        637 GTGGAGGACG

                                                           * 
        647 AGGGTTACAGA-GAATATCAAACTGGCAAGGATGATGCTGCAGAGAATA
          1 AGGGTTACAGATGAATATCAAACTGGCAAGGATGATGCTGCAGAGAACA

                    **           *                             
        695 AGGGTTGTGGAGATGAATATCTAACTGGCAAGGATGATGCTGCAGAGAACA
          1 AGGG-T-TACAGATGAATATCAAACTGGCAAGGATGATGCTGCAGAGAACA

                   
        746 AGGGTTA
          1 AGGGTTA

        753 TGGAGATGAA


Statistics
Matches: 50,  Mismatches: 5, Indels: 5
        0.83            0.08        0.08

Matches are distributed among these distances:
  48    4  0.08
  49    2  0.04
  50    5  0.10
  51   39  0.78

ACGTcount: A:0.36, C:0.11, G:0.32, T:0.21


Consensus pattern (49 bp):   
AGGGTTACAGATGAATATCAAACTGGCAAGGATGATGCTGCAGAGAACA

Found at i:721 original size:51 final size:51

Alignment explanation


    Indices: 658--763  Score: 185
    Period size: 51  Copynumber: 2.1  Consensus size: 51

        648 GGGTTACAGA

                                               *       *       
        658 GAATATCAAACTGGCAAGGATGATGCTGCAGAGAATAAGGGTTGTGGAGAT
          1 GAATATCAAACTGGCAAGGATGATGCTGCAGAGAACAAGGGTTATGGAGAT

                   *                                           
        709 GAATATCTAACTGGCAAGGATGATGCTGCAGAGAACAAGGGTTATGGAGAT
          1 GAATATCAAACTGGCAAGGATGATGCTGCAGAGAACAAGGGTTATGGAGAT

                
        760 GAAT
          1 GAAT

        764 CTGATCATAT


Statistics
Matches: 52,  Mismatches: 3, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  51   52  1.00

ACGTcount: A:0.36, C:0.10, G:0.32, T:0.22


Consensus pattern (51 bp):   
GAATATCAAACTGGCAAGGATGATGCTGCAGAGAACAAGGGTTATGGAGAT
Done.