Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021444593.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1710
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.25


Found at i:786 original size:60 final size:60

Alignment explanation


    Indices: 707--828  Score: 165
    Period size: 60  Copynumber: 2.0  Consensus size: 60

        697 AGGACAAGAA

                                                        *                
        707 GATGATGAAGAAGAAGATTATAACTATCAGGAAGAAGGAGAAGATAGTGTA-CTGGAGATG
          1 GATGATGAAGAAGAAGATTATAACTATCAGGAAGAAGGAGAAGACAGTG-AGCTGGAGATG

                    *  *  *      **     *                               
        767 GATGATGATGATGATGATTATGGCTATCTGGAAGAAGGAGAAGACAGTGAGCTGGAGATG
          1 GATGATGAAGAAGAAGATTATAACTATCAGGAAGAAGGAGAAGACAGTGAGCTGGAGATG

              
        827 GA
          1 GA

        829 GAAAGAGGAG


Statistics
Matches: 54,  Mismatches: 7, Indels: 2
        0.86            0.11        0.03

Matches are distributed among these distances:
  59    1  0.02
  60   53  0.98

ACGTcount: A:0.39, C:0.06, G:0.34, T:0.21


Consensus pattern (60 bp):   
GATGATGAAGAAGAAGATTATAACTATCAGGAAGAAGGAGAAGACAGTGAGCTGGAGATG
Done.