Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: XM_021419791.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4628
ACGTcount: A:0.27, C:0.21, G:0.25, T:0.28


Found at i:224 original size:5 final size:5

Alignment explanation


    Indices: 214--241  Score: 56
    Period size: 5  Copynumber: 5.6  Consensus size: 5

        204 CTGTTTTACA

                                             
        214 ATCAG ATCAG ATCAG ATCAG ATCAG ATC
          1 ATCAG ATCAG ATCAG ATCAG ATCAG ATC

        242 GGGGAGAAAT


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   5   23  1.00

ACGTcount: A:0.39, C:0.21, G:0.18, T:0.21


Consensus pattern (5 bp):   
ATCAG

Found at i:1924 original size:6 final size:6

Alignment explanation


    Indices: 1915--1952  Score: 51
    Period size: 6  Copynumber: 6.3  Consensus size: 6

       1905 AGCTAAAGAA

                                              *          
       1915 GCAGCT GCAGCT GCAGCT -CAGGCT GCAGCA GCAGCT GC
          1 GCAGCT GCAGCT GCAGCT GCA-GCT GCAGCT GCAGCT GC

       1953 TACTGCTGCT


Statistics
Matches: 28,  Mismatches: 2, Indels: 4
        0.82            0.06        0.12

Matches are distributed among these distances:
   5    2  0.07
   6   24  0.86
   7    2  0.07

ACGTcount: A:0.18, C:0.34, G:0.34, T:0.13


Consensus pattern (6 bp):   
GCAGCT

Found at i:3993 original size:48 final size:48

Alignment explanation


    Indices: 3917--4056  Score: 183
    Period size: 48  Copynumber: 2.9  Consensus size: 48

       3907 CCAGCTGAAG

                      *                   * *         *      
       3917 CACCAATAGGTGCACCACCTCCCA-GTGCATCTGCTGCAGCAGCAGGCA
          1 CACCAATAGGAGCACCACCT-CCAGGTGCACCAGCTGCAGCACCAGGCA

            *                                 *   *         
       3965 TACCAATAGGAGCACCACCTCCAGGTGCACCAGCAGCAACACCAGGCA
          1 CACCAATAGGAGCACCACCTCCAGGTGCACCAGCTGCAGCACCAGGCA

                                * *                     
       4013 CACCAATAGGAGCACCACCTTCTGGTGCACCAGCTGCAGCACCA
          1 CACCAATAGGAGCACCACCTCCAGGTGCACCAGCTGCAGCACCA

       4057 ATAGGTGCGC


Statistics
Matches: 79,  Mismatches: 12, Indels: 2
        0.85            0.13        0.02

Matches are distributed among these distances:
  47    3  0.04
  48   76  0.96

ACGTcount: A:0.29, C:0.38, G:0.21, T:0.12


Consensus pattern (48 bp):   
CACCAATAGGAGCACCACCTCCAGGTGCACCAGCTGCAGCACCAGGCA
Done.