Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Tc05v2_t008660.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 579

Length: 966
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32


Found at i:132 original size:2 final size:2

Alignment explanation


    Indices: 125--170  Score: 56
    Period size: 2  Copynumber: 23.0  Consensus size: 2

        115 TTCACCAGAT

                            *  *        *     *                           
        125 TC TC TC TC TC TT TT TC TC TG TC TG TC TC TC TC TC TC TC TC TC
          1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC

                 
        167 TC TC
          1 TC TC

        171 ACTCAAATAT


Statistics
Matches: 38,  Mismatches: 6, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
   2   38  1.00

ACGTcount: A:0.00, C:0.41, G:0.04, T:0.54


Consensus pattern (2 bp):   
TC

Done.