Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Tc08v2_t000510.3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 793

Length: 1323
ACGTcount: A:0.28, C:0.18, G:0.22, T:0.31


Found at i:1028 original size:222 final size:222

Alignment explanation


    Indices: 634--1074  Score: 758
    Period size: 222  Copynumber: 2.0  Consensus size: 222

        624 TTATATTACA

                                                                             
        634 GTTGGTTACCATCCTGACTTTGAAGGCTCAAGATGTTTGTTCATAGTTCGAAAAGATGGAGAACT
          1 GTTGGTTACCATCCTGACTTTGAAGGCTCAAGATGTTTGTTCATAGTTCGAAAAGATGGAGAACT

                                                                             
        699 GATTGACTTTTCTTACTGGAAATGCATCAAAGGCCTGATCAGAAAAAACTATCCTCTATATGCAG
         66 GATTGACTTTTCTTACTGGAAATGCATCAAAGGCCTGATCAGAAAAAACTATCCTCTATATGCAG

                                 *     *                           *         
        764 ACAGCTTCATTCTCAGACATTTTCGACGGCGTAGACGGAGTTGATGAGGGTAATATTCTGAACTT
        131 ACAGCTTCATTCTCAGACATTCTCGACAGCGTAGACGGAGTTGATGAGGGTAATACTCTGAACTT

                                       
        829 GTCAACCACTTTATGTTATTATGTCAG
        196 GTCAACCACTTTATGTTATTATGTCAG

                   *                    *                   * *              
        856 GTTGGTTGCCATCCTGACTTTGAAGGCTTAAGATGTTTGTTCATAGTTTGGAAAGATGGAGAACT
          1 GTTGGTTACCATCCTGACTTTGAAGGCTCAAGATGTTTGTTCATAGTTCGAAAAGATGGAGAACT

             *   *                                                           
        921 GGTTGTCTTTTCTTACTGGAAATGCATCAAAGGCCTGATCAGAAAAAACTATCCTCTATATGCAG
         66 GATTGACTTTTCTTACTGGAAATGCATCAAAGGCCTGATCAGAAAAAACTATCCTCTATATGCAG

                                          *     *                          * 
        986 ACAGCTTCATTCTCAGACAATTCT-GACAGTGTAGATGGAGTTGATGAGGGTAATACTCTGAATT
        131 ACAGCTTCATTCTCAGAC-ATTCTCGACAGCGTAGACGGAGTTGATGAGGGTAATACTCTGAACT

                                     
       1050 TGTCAACCACTTTATGTTATTATGT
        195 TGTCAACCACTTTATGTTATTATGT

       1075 TTAGAGGATT


Statistics
Matches: 206,  Mismatches: 12, Indels: 2
        0.94            0.05        0.01

Matches are distributed among these distances:
 222  202  0.98
 223    4  0.02

ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33


Consensus pattern (222 bp):   
GTTGGTTACCATCCTGACTTTGAAGGCTCAAGATGTTTGTTCATAGTTCGAAAAGATGGAGAACT
GATTGACTTTTCTTACTGGAAATGCATCAAAGGCCTGATCAGAAAAAACTATCCTCTATATGCAG
ACAGCTTCATTCTCAGACATTCTCGACAGCGTAGACGGAGTTGATGAGGGTAATACTCTGAACTT
GTCAACCACTTTATGTTATTATGTCAG
Done.