Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Tc09v2_t017820.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 200

Length: 249
ACGTcount: A:0.40, C:0.18, G:0.21, T:0.21


Found at i:162 original size:84 final size:84

Alignment explanation


    Indices: 43--210  Score: 282
    Period size: 84  Copynumber: 2.0  Consensus size: 84

         33 TGACAAAAGA

                   *                                            **           
         43 TGGTGAATCCTCTGAAAAAAGGCAAAGAAATTGCACCCGAGGATCAATAGTCGGAGTACTCCAAA
          1 TGGTGAACCCTCTGAAAAAAGGCAAAGAAATTGCACCCGAGGATCAATAGTCAAAGTACTCCAAA

                      *        
        108 ATTCAAACTCTTGATACAG
         66 ATTCAAACTCCTGATACAG

                               *                *                            
        127 TGGTGAACCCTCTGAAAAAGGGCAAAGAAATTGCACTCGAGGATCAATAGTCAAAGTACTCCAAA
          1 TGGTGAACCCTCTGAAAAAAGGCAAAGAAATTGCACCCGAGGATCAATAGTCAAAGTACTCCAAA

                               
        192 ATTCAAACTCCTGATACAG
         66 ATTCAAACTCCTGATACAG

        211 CTCAGAATAG


Statistics
Matches: 78,  Mismatches: 6, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  84   78  1.00

ACGTcount: A:0.39, C:0.21, G:0.20, T:0.21


Consensus pattern (84 bp):   
TGGTGAACCCTCTGAAAAAAGGCAAAGAAATTGCACCCGAGGATCAATAGTCAAAGTACTCCAAA
ATTCAAACTCCTGATACAG
Done.