Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Tc01v2_t026420.8

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2288
ACGTcount: A:0.30, C:0.22, G:0.19, T:0.28


Found at i:286 original size:12 final size:12

Alignment explanation


    Indices: 262--322  Score: 59
    Period size: 12  Copynumber: 5.1  Consensus size: 12

        252 TTCTCCTCCG

                 *      
        262 ACCACTACCACC
          1 ACCACAACCACC

                 *  *   
        274 ACCACCACAACC
          1 ACCACAACCACC

                   *    
        286 ACCACAATCACC
          1 ACCACAACCACC

             **         
        298 ATTACAACCACC
          1 ACCACAACCACC

                *       
        310 ACCATAACCACC
          1 ACCACAACCACC

             
        322 A
          1 A

        323 GCAATTCGAA


Statistics
Matches: 38,  Mismatches: 11, Indels: 0
        0.78            0.22        0.00

Matches are distributed among these distances:
  12   38  1.00

ACGTcount: A:0.41, C:0.51, G:0.00, T:0.08


Consensus pattern (12 bp):   
ACCACAACCACC
Done.