Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Tc10v2_t006920.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1975
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.26


Found at i:727 original size:63 final size:62

Alignment explanation


    Indices: 651--855  Score: 173
    Period size: 63  Copynumber: 3.3  Consensus size: 62

        641 GAACAAAGTT

                    *        *    *         *                          *   
        651 GAGATCGATAGGCTTCGCAAATTAAATGATGGGCATAAAAAATTCGAGGAAGAGAAAAACGTC
          1 GAGATCGAAAGGCTTCGTAAA-AAAATGATGGACATAAAAAATTCGAGGAAGAGAAAAAGGTC

                 *        *                 *          *             *      
        714 GAGATTGAAAGGCTCCGTAAAGAAAATGAT-GCCTATAAAAAACTCGAGGAAGAGAATAAGGTC
          1 GAGATCGAAAGGCTTCGTAAA-AAAATGATGGAC-ATAAAAAATTCGAGGAAGAGAAAAAGGTC

            *    *          *         *     * *                       *      
        777 AAGATTGAGAA-GCTTTGTAAAGAAATTGATGCATATAAAAAAATT-GAGGAAGAGAACAAGGTC
          1 GAGATCGA-AAGGCTTCGTAAA-AAAATGATGGACAT-AAAAAATTCGAGGAAGAGAAAAAGGTC

              *             
        840 GAAATCGAAAGGCTTC
          1 GAGATCGAAAGGCTTC

        856 TTGAAGAAAA


Statistics
Matches: 114,  Mismatches: 23, Indels: 10
        0.78            0.16        0.07

Matches are distributed among these distances:
  62    4  0.04
  63  101  0.89
  64    9  0.08

ACGTcount: A:0.44, C:0.11, G:0.25, T:0.20


Consensus pattern (62 bp):   
GAGATCGAAAGGCTTCGTAAAAAAATGATGGACATAAAAAATTCGAGGAAGAGAAAAAGGTC

Found at i:863 original size:63 final size:63

Alignment explanation


    Indices: 687--878  Score: 201
    Period size: 63  Copynumber: 3.0  Consensus size: 63

        677 TGATGGGCAT

                                   *     *           * *               *    
        687 AAAAAATTCGAGGAAGAGAAAAACGTCGAGATTGAAAGGCTCCGTAAAGAAAATGATGCCTATA
          1 AAAAAATT-GAGGAAGAGAAAAAGGTCGAAATTGAAAGGCTTCTTAAAGAAAATGATGCATATA

                 * *           *                                  *          
        751 AAAAACTCGAGGAAGAGAATAAGGTC-AAGATTGAGAA-GCTT-TGTAAAGAAATTGATGCATAT
          1 AAAAAATTGAGGAAGAGAAAAAGGTCGAA-ATTGA-AAGGCTTCT-TAAAGAAAATGATGCATAT

             
        813 A
         63 A

                               *           *            *         * *      
        814 AAAAAATTGAGGAAGAGAACAAGGTCGAAATCGAAAGGCTTCTTGAAGAAAATGCTACATATA
          1 AAAAAATTGAGGAAGAGAAAAAGGTCGAAATTGAAAGGCTTCTTAAAGAAAATGATGCATATA

              
        877 AA
          1 AA

        879 GTTTCAAAAA


Statistics
Matches: 105,  Mismatches: 17, Indels: 13
        0.78            0.13        0.10

Matches are distributed among these distances:
  62    3  0.03
  63   91  0.87
  64   11  0.10

ACGTcount: A:0.47, C:0.10, G:0.23, T:0.19


Consensus pattern (63 bp):   
AAAAAATTGAGGAAGAGAAAAAGGTCGAAATTGAAAGGCTTCTTAAAGAAAATGATGCATATA
Done.