Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Tc10v2_t013410.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4447
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30


Found at i:2850 original size:48 final size:48

Alignment explanation


    Indices: 2778--3029  Score: 238
    Period size: 48  Copynumber: 5.1  Consensus size: 48

       2768 CAGGCCATGT

                      *       *      *              *       
       2778 TTCTTTTGGCATTCCAGAACACTCCGTACCAAGTAAGAAAGTGGATGA
          1 TTCTTTTGGCTTTCCAGAGCACTCCATACCAAGTAAGAAACTGGATGA

                               *                 *     *       
       2826 TTCTTTTGGCTTTCCAGAGTACTCCATACCAAGAGATGAGAAAGTGGATGA
          1 TTCTTTTGGCTTTCCAGAGCACTCCATACC-A-AG-TAAGAAACTGGATGA

                   **                         *      *       
       2877 TTCTTTTCTCTTTCCAGAGCACTCCATACCAAGTCAGAAACCGGATGAA
          1 TTCTTTTGGCTTTCCAGAGCACTCCATACCAAGTAAGAAACTGGATG-A

                           * *  *      *              *         
       2926 TT-TTTTGGCTCTT-TACAGTACTCCAGACCAAGTGATGAGAGACTGGATGA
          1 TTCTTTTGGCT-TTCCAGAGCACTCCATACCAAGT-A--AGAAACTGGATGA

                   **              *                  *     
       2976 TTCTTTTCTCTTTCCAGAGCACTTCATACCAAGTAAGAAACTCGATGA
          1 TTCTTTTGGCTTTCCAGAGCACTCCATACCAAGTAAGAAACTGGATGA

                  
       3024 TTCTTT
          1 TTCTTT

       3030 CTCATCTTCT


Statistics
Matches: 165,  Mismatches: 29, Indels: 20
        0.77            0.14        0.09

Matches are distributed among these distances:
  48   76  0.46
  49    8  0.05
  50    9  0.05
  51   72  0.44

ACGTcount: A:0.28, C:0.22, G:0.19, T:0.31


Consensus pattern (48 bp):   
TTCTTTTGGCTTTCCAGAGCACTCCATACCAAGTAAGAAACTGGATGA

Found at i:2892 original size:99 final size:99

Alignment explanation


    Indices: 2789--3029  Score: 333
    Period size: 99  Copynumber: 2.4  Consensus size: 99

       2779 TCTTTTGGCA

                   *      *              *                        *         *
       2789 TTCCAGAACACTCCGTACCAAGTAAGAAAGTGGATGATTCTTTTGGCT-TTCCAGAGTACTCCAT
          1 TTCCAGAGCACTCCATACCAAGTAAGAAACTGGATGATTCTTTTGGCTCTT-CACAGTACTCCAG

                            *                  
       2853 ACCAAGAGATGAGAAAGTGGATGATTCTTTTCTCT
         65 ACCAAGAGATGAGAAACTGGATGATTCTTTTCTCT

                                   *      *                     *            
       2888 TTCCAGAGCACTCCATACCAAGTCAGAAACCGGATGAATT-TTTTGGCTCTTTACAGTACTCCAG
          1 TTCCAGAGCACTCCATACCAAGTAAGAAACTGGATG-ATTCTTTTGGCTCTTCACAGTACTCCAG

                  *       *                    
       2952 ACCAAGTGATGAGAGACTGGATGATTCTTTTCTCT
         65 ACCAAGAGATGAGAAACTGGATGATTCTTTTCTCT

                        *                  *           
       2987 TTCCAGAGCACTTCATACCAAGTAAGAAACTCGATGATTCTTT
          1 TTCCAGAGCACTCCATACCAAGTAAGAAACTGGATGATTCTTT

       3030 CTCATCTTCT


Statistics
Matches: 124,  Mismatches: 15, Indels: 6
        0.86            0.10        0.04

Matches are distributed among these distances:
  98    3  0.02
  99  116  0.94
 100    5  0.04

ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30


Consensus pattern (99 bp):   
TTCCAGAGCACTCCATACCAAGTAAGAAACTGGATGATTCTTTTGGCTCTTCACAGTACTCCAGA
CCAAGAGATGAGAAACTGGATGATTCTTTTCTCT
Done.