Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Tc02v2_g008630

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 836

Length: 1394
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26


Found at i:261 original size:99 final size:99

Alignment explanation


    Indices: 149--332  Score: 325
    Period size: 99  Copynumber: 1.9  Consensus size: 99

        139 ACTACTTATA

                                                                     **    * 
        149 CTCCTCCAACAGAATCACAGAATCCTCCTCCATC-CTCACCATCTCCTCCCACTCCAGTTCCATC
          1 CTCCTCCAACAGAATCACAGAATCCTCCTCCATCAC-CACCATCTCCTCCCACTCCAACTCCACC

                                               
        213 AACTACTTACACTCCTCCATCAACATCTCCACCGT
         65 AACTACTTACACTCCTCCATCAACATCTCCACCGT

                                                                             
        248 CTCCTCCAACAGAATCACAGAATCCTCCTCCATCACCACCATCTCCTCCCACTCCAACTCCACCA
          1 CTCCTCCAACAGAATCACAGAATCCTCCTCCATCACCACCATCTCCTCCCACTCCAACTCCACCA

                                
        313 ACTACTTACACTCCTCCATC
         66 ACTACTTACACTCCTCCATC

        333 TCCTCCAACA


Statistics
Matches: 81,  Mismatches: 3, Indels: 2
        0.94            0.03        0.02

Matches are distributed among these distances:
  99   80  0.99
 100    1  0.01

ACGTcount: A:0.26, C:0.48, G:0.03, T:0.23


Consensus pattern (99 bp):   
CTCCTCCAACAGAATCACAGAATCCTCCTCCATCACCACCATCTCCTCCCACTCCAACTCCACCA
ACTACTTACACTCCTCCATCAACATCTCCACCGT
Done.