Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Tc02v2_t013540.1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 685

Length: 1142
ACGTcount: A:0.29, C:0.25, G:0.20, T:0.26


Found at i:869 original size:18 final size:18

Alignment explanation


    Indices: 827--871  Score: 54
    Period size: 18  Copynumber: 2.4  Consensus size: 18

        817 CCGATGCTGT

                              *
        827 AGCAAATGAAACCAAAGAT
          1 AGCAAA-GAAACCAAAGAG

             *        *       
        846 AACAAAGAAAGCAAAGAG
          1 AGCAAAGAAACCAAAGAG

                    
        864 AGCAAAGA
          1 AGCAAAGA

        872 TAAAGGTTCC


Statistics
Matches: 22,  Mismatches: 4, Indels: 1
        0.81            0.15        0.04

Matches are distributed among these distances:
  18   17  0.77
  19    5  0.23

ACGTcount: A:0.62, C:0.13, G:0.20, T:0.04


Consensus pattern (18 bp):   
AGCAAAGAAACCAAAGAG
Done.