Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1001
Parameters: 2 7 7 80 10 50 1000
Length:  200027

Tables:   1   2   

This is table  2  of  2  ( 160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
153550--153705
27
5.7
27
85
3
195
24
29
14
32
1.94
153546--153742
55
3.6
54
77
3
196
24
29
14
30
1.94
153715--153987
29
9.4
30
82
4
285
31
23
16
28
1.96
153714--153987
87
3.1
87
84
2
336
31
23
16
28
1.96
155179--155241
32
1.9
33
87
9
94
31
15
15
36
1.90
155159--155260
52
1.9
53
82
9
129
33
16
14
35
1.90
155292--155345
20
2.7
20
85
8
74
35
14
18
31
1.91
161458--161497
21
1.9
21
94
0
71
22
10
15
52
1.71
162998--163064
33
2.0
33
82
0
80
26
29
14
28
1.96
163373--163409
18
2.0
18
89
5
56
40
0
35
24
1.55
163996--164049
19
2.8
19
94
0
90
33
14
16
35
1.90
168449--168541
20
4.4
20
77
9
96
24
19
12
43
1.86
169165--169265
52
1.9
52
89
0
157
24
13
29
31
1.94
169081--169357
141
2.0
141
93
0
473
25
22
21
29
1.99
169217--169415
89
2.2
89
84
1
247
27
24
17
31
1.97
169601--169940
44
7.7
44
70
12
162
21
22
16
39
1.92
169577--169934
134
2.7
132
77
8
357
20
23
15
39
1.91
170394--170850
127
3.6
125
79
4
312
18
29
17
33
1.95
170099--171312
42
28.8
42
73
6
587
19
28
17
34
1.95
171891--171942
17
3.2
16
78
7
52
75
0
1
23
0.91
171888--171970
25
3.1
26
79
10
71
69
0
2
27
1.00
171905--171968
28
2.4
25
82
15
74
68
0
1
29
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
172057--172108
17
3.1
17
85
0
77
19
23
9
48
1.78
172851--172922
33
2.3
33
76
11
80
66
9
19
4
1.37
173116--173185
23
3.2
23
82
6
92
55
25
12
5
1.59
181888--181913
13
2.0
13
100
0
52
30
15
15
38
1.88
183747--183848
52
2.0
52
82
0
123
25
24
15
34
1.95
184089--184248
32
4.8
33
75
4
108
30
31
14
24
1.94
184089--184168
33
2.4
33
87
4
106
30
28
16
25
1.96
184324--184922
52
11.3
51
76
7
353
24
23
15
36
1.93
184411--184922
52
9.8
52
77
5
449
24
22
15
36
1.93
185602--185653
20
2.5
20
84
3
68
42
11
17
28
1.84
188108--188132
13
1.9
13
100
0
50
32
16
16
36
1.90
188162--188214
19
2.7
20
88
2
72
35
16
15
32
1.90
189240--189371
68
1.9
68
82
4
165
34
15
7
42
1.75
193343--193368
13
2.0
13
100
0
52
30
15
15
38
1.88
193427--193479
20
2.7
20
100
0
106
33
20
15
30
1.93
195910--195948
13
3.0
13
100
0
78
38
15
15
30
1.88
195934--196012
20
3.7
20
75
15
68
43
16
15
25
1.87
199903--199933
15
2.1
15
93
0
53
48
16
22
12
1.80

Tables:   1   2

The End!