Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1018
Parameters: 2 7 7 80 10 50 1000
Length:  62341

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1118--1183
33
2.0
33
85
8
91
39
3
1
56
1.24
2616--2654
19
2.0
20
90
5
62
25
0
0
74
0.82
3562--3600
5
8.0
5
85
5
53
41
2
0
56
1.13
5018--5070
18
3.2
18
77
17
53
60
0
0
39
0.97
5375--5420
17
2.7
17
90
6
67
45
0
2
52
1.13
6885--6926
11
3.8
11
81
12
50
35
0
0
64
0.94
7543--7587
22
2.1
22
91
4
74
42
11
6
40
1.67
7900--7924
13
1.9
13
100
0
50
56
0
0
44
0.99
7908--7944
16
2.2
17
90
4
58
59
0
0
40
0.97
9149--9202
25
2.1
27
83
13
69
51
3
1
42
1.30
9163--9215
17
3.1
16
82
15
54
60
3
0
35
1.15
9771--9831
20
3.1
20
97
2
115
39
0
0
60
0.97
9766--9796
14
2.1
15
94
5
55
41
0
0
58
0.98
9935--9993
9
6.4
9
76
3
55
49
3
0
47
1.18
10254--10296
16
2.5
18
85
7
63
30
2
2
65
1.18
10288--10330
20
2.2
20
87
8
61
46
2
0
51
1.13
10315--10371
16
3.4
16
74
9
51
36
0
0
63
0.95
10322--10371
16
2.9
18
79
11
59
34
0
0
66
0.92
15522--15572
21
2.3
23
80
16
63
21
0
9
68
1.18
17453--17518
5
13.4
5
75
12
57
63
0
1
34
1.04
17479--17558
32
2.5
31
82
8
88
52
2
1
43
1.22
17569--17620
23
2.2
24
86
10
81
59
3
0
36
1.16
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
17454--17598
15
9.9
15
67
21
69
56
1
1
40
1.16
18181--18214
16
2.1
16
88
0
50
58
0
0
41
0.98
19169--19220
2
26.5
2
76
3
52
42
1
3
51
1.31
19185--19228
21
2.2
20
95
4
79
36
0
4
59
1.18
19167--19230
8
8.4
8
76
10
53
37
1
3
57
1.24
19177--19239
29
2.2
30
80
8
76
34
3
4
57
1.36
20069--20136
22
3.1
22
73
16
70
44
1
0
54
1.09
21778--21826
23
2.3
21
86
10
64
53
0
0
46
1.00
21787--21822
11
3.2
11
88
4
54
58
0
0
41
0.98
22489--22531
14
3.1
14
96
0
77
67
0
0
32
0.91
22463--22531
28
2.6
28
79
9
81
69
1
0
28
0.97
22658--22712
21
2.5
22
85
8
76
65
1
0
32
1.03
22663--22712
12
4.5
12
76
16
54
68
2
0
30
1.01
22696--22751
23
2.3
24
75
6
60
58
1
0
39
1.08
22759--22823
10
6.3
10
77
13
51
63
0
0
36
0.95
22730--22814
23
3.7
22
78
10
82
62
1
0
36
1.03
23669--23693
2
12.5
2
100
0
50
52
0
0
48
1.00
26615--26798
91
2.0
91
95
0
332
32
8
11
46
1.71
27877--27912
2
18.0
2
100
0
72
50
0
0
50
1.00
28561--28587
2
13.5
2
100
0
54
48
0
0
51
1.00
31064--31101
20
1.9
20
88
0
58
44
5
7
42
1.56
32669--32701
14
2.4
14
85
15
50
36
6
0
57
1.23
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38191--38238
25
2.0
25
87
4
71
66
12
6
14
1.42
38341--38378
16
2.4
16
86
4
51
60
0
5
34
1.19
38537--38605
16
4.3
16
80
7
61
47
18
15
17
1.82
38537--38605
32
2.2
32
81
5
77
47
18
15
17
1.82
45326--45354
14
2.1
14
93
6
51
13
3
6
75
1.13
46146--46179
16
2.1
16
88
0
50
73
0
0
26
0.83
50160--50213
21
2.6
21
91
2
83
29
16
14
38
1.89
55157--55199
21
2.0
21
90
0
68
39
0
0
60
0.97
55638--55748
56
2.0
57
96
1
206
48
4
26
20
1.68
56363--56402
19
2.1
19
95
0
71
45
5
12
37
1.64
56585--56626
20
2.2
19
95
4
75
52
4
11
30
1.59
60343--60412
24
2.8
25
83
14
83
47
24
8
20
1.78
60345--60441
27
3.7
26
83
4
108
46
24
8
20
1.78
60429--60486
26
2.3
25
91
5
91
25
15
25
32
1.95

Tables:   1

The End!