genome.fa.s102.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold102
Parameters: 2 7 7 80 10 50 1000
Length:  331322

Tables:   1   2   

This is table  2  of  2  ( 189 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209899--209923	13	1.9	13	100	0	50	36	16	16	32	1.90
209876--209943	33	2.1	33	88	2	102	32	14	17	35	1.91
211566--211613	21	2.3	21	100	0	96	20	8	33	37	1.83
212123--212161	13	3.0	13	96	0	69	35	15	17	30	1.91
218339--218363	13	1.9	13	100	0	50	36	16	16	32	1.90
218316--218383	33	2.1	33	88	2	102	32	14	17	35	1.91
220143--220186	11	3.9	11	87	3	61	4	18	6	70	1.27
220144--220186	22	1.9	22	90	4	68	4	16	6	72	1.24
226933--227107	80	2.2	80	86	4	237	38	9	21	30	1.85
229640--229681	20	2.1	20	90	0	66	42	14	0	42	1.45
233386--233438	20	2.6	21	85	8	74	32	15	11	41	1.82
233489--233513	13	1.9	13	100	0	50	32	16	20	32	1.94
233469--233533	33	2.0	32	85	11	87	33	13	20	32	1.91
238264--238299	16	2.2	17	90	5	56	58	0	11	30	1.33
239708--239747	13	3.1	13	85	0	53	32	15	15	37	1.88
242740--242783	23	1.9	23	86	9	63	29	6	22	40	1.80
243200--243243	23	1.9	23	81	9	54	40	18	6	34	1.77
243574--243624	20	2.5	20	96	0	93	31	11	11	45	1.77
246523--246580	21	2.6	22	86	10	82	31	22	10	36	1.88
246547--246636	47	1.9	47	93	4	155	31	22	8	37	1.85
246715--246753	20	2.0	19	90	5	60	33	12	15	38	1.85
255806--255883	39	2.0	39	97	0	147	30	14	17	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258644--258691	19	2.6	18	81	12	62	43	0	0	56	0.99
259336--259373	16	2.4	16	86	8	51	39	2	0	57	1.12
259455--259530	20	3.5	20	68	22	62	60	0	1	38	1.05
259455--259538	21	3.4	27	65	21	83	60	0	1	38	1.04
259448--259541	47	2.0	47	100	0	188	57	0	2	40	1.11
259455--259598	20	7.2	20	65	18	59	63	1	2	33	1.15
259963--260003	2	20.5	2	84	0	55	51	0	2	46	1.14
261966--262008	1	43.0	1	80	0	50	0	6	2	90	0.52
261966--262008	8	5.6	8	89	10	56	0	6	2	90	0.52
261966--262008	15	3.0	14	90	10	61	0	6	2	90	0.52
261966--262008	18	2.5	17	85	7	59	0	6	2	90	0.52
264942--264994	27	2.0	27	96	0	97	32	3	28	35	1.75
265656--266112	151	3.0	151	100	0	914	35	18	22	23	1.96
267585--267651	33	2.0	33	100	0	134	35	8	8	46	1.67
269477--269517	15	2.7	16	74	11	50	12	12	31	43	1.79
269652--269676	13	1.9	13	100	0	50	36	16	16	32	1.90
269631--269696	33	2.0	33	88	2	98	31	13	18	36	1.90
278073--278097	13	1.9	13	100	0	50	36	16	16	32	1.90
278050--278117	33	2.1	33	91	2	111	32	13	17	36	1.89
278683--278751	19	3.6	19	94	2	111	37	17	15	28	1.91
278736--278767	13	2.5	13	94	0	55	40	12	15	31	1.85
286499--286533	13	2.7	13	95	0	61	34	17	14	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287633--287689	20	2.8	20	83	0	69	38	14	15	31	1.87
287795--287820	13	2.0	13	100	0	52	30	15	15	38	1.88
287775--287842	33	2.1	32	88	2	100	35	16	14	33	1.89
292679--292732	20	2.7	20	88	5	74	38	18	11	31	1.86
294933--295091	31	4.9	32	83	7	162	33	11	23	31	1.90
300569--300708	52	2.7	52	81	0	181	30	14	11	43	1.80
307196--307221	13	2.0	13	100	0	52	30	15	15	38	1.88
307176--307239	32	2.0	33	87	3	94	28	14	17	40	1.88
313013--314686	157	10.7	156	79	4	1344	23	18	20	37	1.94
313076--314400	313	4.2	312	84	3	1470	23	17	21	38	1.93
313081--314212	312	3.6	311	87	2	1461	22	18	21	37	1.94
314176--314609	156	2.8	155	78	5	340	25	17	18	38	1.93
315803--315976	1	174.0	1	71	0	105	84	10	2	2	0.80
315803--315974	10	16.7	10	78	16	142	84	11	2	2	0.81
315806--315976	46	3.6	46	83	11	202	84	11	2	2	0.81
317415--317738	30	11.1	29	81	7	313	31	27	16	23	1.97
317415--317733	58	5.5	58	83	7	382	31	27	17	23	1.97
317413--317734	88	3.7	85	84	6	409	31	28	17	23	1.97
317725--317944	52	4.4	52	75	13	199	24	24	15	35	1.95
317740--317829	43	2.1	43	93	0	153	26	24	17	31	1.97
318720--318744	13	1.9	13	100	0	50	36	16	16	32	1.90
318700--318766	33	2.0	33	88	0	98	32	11	14	40	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318807--318831	13	1.9	13	100	0	50	32	16	16	36	1.90
318840--319020	52	3.5	52	95	0	317	34	18	17	29	1.93
323147--323173	10	2.7	10	100	0	54	0	0	22	77	0.76

Tables:   1   2

The End!