Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1030
Parameters: 2 7 7 80 10 50 1000
Length:  40554

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1162--1244
36
2.5
31
79
16
85
39
2
2
55
1.26
5200--5252
22
2.5
21
81
6
70
35
5
13
45
1.67
11992--12041
24
2.1
24
100
0
100
16
4
12
68
1.35
14034--14058
12
2.1
12
100
0
50
68
8
16
8
1.38
15135--15159
13
1.9
13
100
0
50
32
16
16
36
1.90
15147--15199
21
2.6
21
84
3
72
41
13
15
30
1.85
15251--15276
13
2.0
13
100
0
52
30
15
15
38
1.88
15231--15298
33
2.1
32
88
2
100
33
19
14
32
1.92
18986--19211
80
2.8
80
81
3
240
38
12
19
28
1.89
19076--19264
80
2.4
80
83
2
238
38
13
17
30
1.89
21100--21130
15
2.1
15
100
0
62
41
19
12
25
1.87
22422--22450
15
2.0
15
93
6
51
58
0
0
41
0.98
22562--22595
16
2.1
16
88
0
50
29
0
2
67
1.05
22682--22725
22
1.9
24
90
9
74
40
0
0
59
0.98
22704--22738
17
1.9
18
88
11
54
42
0
0
57
0.99
22695--22770
24
3.2
24
78
7
77
48
0
0
51
1.00
22788--22833
16
2.9
16
84
12
51
69
2
0
28
1.00
23437--23461
8
3.1
8
100
0
50
24
0
0
76
0.80
23431--23469
20
2.0
20
85
10
53
23
5
0
71
1.05
25328--25387
19
3.2
19
74
9
59
43
1
3
51
1.28
25806--25835
13
2.2
14
94
5
53
40
0
0
60
0.97
25887--25956
5
14.6
5
77
14
58
52
0
0
47
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25886--25955
29
2.4
29
76
9
72
51
0
0
48
1.00
29179--29224
21
2.1
22
84
4
58
19
30
19
30
1.97
37299--37339
2
20.5
2
100
0
82
51
0
0
48
1.00
37530--37570
20
2.0
20
85
0
55
46
0
0
53
1.00
37581--37616
17
2.1
17
89
0
54
41
0
5
52
1.24
38508--38536
15
1.9
15
100
0
58
44
0
0
55
0.99
40236--40273
14
2.5
15
87
8
51
73
7
2
15
1.17

Tables:   1

The End!