genome.fa.s1041.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1041
Parameters: 2 7 7 80 10 50 1000
Length:  1020100

Tables:   1   2   3   4   

This is table  4  of  4  ( 440 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
783010--783058	25	2.0	25	84	4	64	51	0	2	46	1.12
783028--783102	38	1.9	39	81	7	91	45	4	0	50	1.20
786978--787157	60	2.8	65	90	9	264	30	15	15	39	1.88
787220--787700	240	2.0	241	92	1	795	29	15	18	36	1.92
789649--789673	2	12.5	2	100	0	50	0	52	0	48	1.00
806366--806433	33	2.1	32	89	8	102	35	14	16	33	1.89
808296--808355	19	3.0	20	75	7	68	35	16	13	35	1.88
815353--819516	475	8.8	476	84	4	4833	31	18	14	35	1.91
816584--819516	476	6.2	474	85	3	3427	31	18	14	36	1.90
819094--819938	422	2.0	422	85	1	1138	30	19	14	35	1.92
819514--826583	477	14.9	476	85	2	8942	30	18	14	35	1.91
821281--822388	159	7.0	157	66	13	416	30	18	13	37	1.90
821512--826504	159	31.5	160	64	14	668	30	19	14	35	1.91
828206--828268	12	5.8	12	67	27	50	39	0	47	12	1.42
828227--828276	18	2.8	18	81	6	57	44	0	46	10	1.37
833241--836909	476	7.7	475	86	1	4857	30	19	14	35	1.92
841914--841974	9	7.1	9	74	10	65	13	44	0	42	1.43
841919--841995	12	6.9	12	77	19	71	12	46	0	40	1.42
841886--842004	42	2.8	42	93	0	193	10	45	0	42	1.45
843617--850996	476	15.6	475	85	3	8877	30	18	14	36	1.91
844573--846645	159	13.1	155	65	14	399	30	18	14	35	1.92
846890--850996	477	8.7	477	84	3	5195	30	17	14	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
850569--851426	430	2.0	431	87	4	1239	31	18	13	36	1.89
854105--854180	12	6.9	11	75	15	52	39	2	48	9	1.49
854104--854189	24	3.8	24	72	17	85	41	2	45	10	1.51
854095--854213	42	2.8	42	92	0	193	42	2	46	8	1.47
858984--872337	159	84.5	161	66	14	2413	31	17	14	37	1.89
858984--872341	476	28.2	475	86	2	17089	31	17	14	37	1.89
873636--874129	251	2.0	251	100	0	988	31	17	12	38	1.88
873176--874605	727	2.0	727	87	3	2054	30	18	13	37	1.90
873890--875653	476	3.7	473	82	5	2187	31	18	13	36	1.89
874927--875644	159	4.5	158	68	12	405	32	18	13	35	1.90
876952--877445	251	2.0	251	100	0	988	31	17	12	38	1.88
876492--877921	727	2.0	727	86	3	2038	30	18	13	37	1.90
877203--886681	476	20.0	474	85	3	11725	30	17	13	37	1.89
878243--886833	159	54.3	159	66	13	2610	30	17	14	37	1.89
886526--886842	157	2.0	157	88	4	404	29	17	17	36	1.93
886386--887544	609	1.9	607	79	7	1283	30	18	14	36	1.91
889553--903665	159	89.5	154	65	16	2120	31	17	14	37	1.90
886991--903805	475	35.6	474	85	3	21177	31	17	14	37	1.90
892123--903764	159	73.8	158	67	11	3441	31	17	14	36	1.90
904543--904568	13	2.0	13	100	0	52	30	15	15	38	1.88
904719--904770	20	2.6	20	100	0	104	38	19	11	30	1.87
907135--907173	13	3.0	13	96	0	69	35	15	17	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
907159--907237	20	3.7	20	79	15	86	45	15	13	25	1.83
909253--909283	15	2.1	15	93	0	53	12	22	16	48	1.80
911087--911131	21	2.1	21	84	8	56	22	20	4	53	1.63
913349--913374	13	2.0	13	100	0	52	30	15	15	38	1.88
913986--926042	159	76.0	158	66	12	2868	30	18	14	36	1.90
913757--931337	476	37.0	476	86	2	21856	30	18	14	36	1.90
913757--931337	950	18.5	952	87	2	22233	30	18	14	36	1.90
926355--929854	159	22.1	158	66	13	778	30	17	14	36	1.90
930910--931760	424	2.0	423	86	2	1181	30	18	14	36	1.90
937396--937456	9	7.1	9	72	10	56	11	44	1	42	1.50
937401--937435	12	2.9	12	84	16	54	11	48	0	40	1.39
937368--937486	42	2.8	42	90	0	184	9	46	1	42	1.46
937392--937477	24	3.8	24	73	17	85	11	45	1	41	1.48
939071--950004	477	22.7	474	80	7	10386	31	17	13	37	1.90
939081--942184	159	19.6	158	66	14	711	30	17	14	36	1.90
942529--963926	159	134.6	159	65	12	3107	30	18	14	36	1.90
946893--946917	12	2.1	12	100	0	50	8	36	0	56	1.29
949329--950674	672	2.0	671	88	2	1975	30	18	14	36	1.90
950004--964180	475	29.8	474	84	2	17224	30	18	14	36	1.90
950004--964180	476	29.8	476	84	2	17402	30	18	14	36	1.90
969155--969207	9	6.2	9	74	12	58	13	43	0	43	1.43
969141--969215	21	3.6	20	72	21	64	10	44	0	45	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
970823--999524	476	60.2	475	86	2	36343	30	18	14	36	1.90
970846--1012085	159	259.2	156	65	11	6331	30	18	14	36	1.90
976460--977111	160	4.1	158	65	16	372	31	17	13	37	1.89
970823--999524	954	30.1	952	86	2	36480	30	18	14	36	1.90
979325--979976	160	4.1	158	64	15	359	31	17	13	37	1.89
980758--981409	160	4.1	158	65	16	372	31	17	13	37	1.89
982191--982842	160	4.1	158	64	15	359	31	17	13	37	1.89
983624--984275	160	4.1	158	65	16	372	31	17	13	37	1.89
999151--999832	316	2.2	317	83	1	848	30	17	14	37	1.90
998695--1000322	791	2.1	792	84	2	2137	30	18	14	37	1.90
999468--1008691	476	19.3	476	81	5	8372	30	18	14	36	1.91
999468--1008691	951	9.7	951	81	5	8968	30	18	14	36	1.91
1008389--1009021	347	1.8	347	85	0	899	29	19	16	35	1.93
1008686--1012086	476	7.1	474	85	1	4223	29	18	14	36	1.91

Tables:   1   2   3   4

The End!