Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1059
Parameters: 2 7 7 80 10 50 1000
Length:  187435

Tables:   1   2   

This is table  2  of  2  ( 215 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101262--101331
28
2.5
28
95
0
122
47
0
4
48
1.21
107067--107101
2
17.5
2
100
0
70
51
0
48
0
1.00
107282--107320
21
1.9
21
94
5
71
46
0
0
53
1.00
107656--107714
22
2.9
19
81
16
66
72
0
0
27
0.84
107658--107719
11
5.7
12
75
22
57
70
0
0
29
0.87
107656--107755
45
2.4
41
80
17
100
66
2
3
29
1.18
107951--107995
18
2.4
20
75
24
53
51
0
0
48
1.00
107960--108005
17
2.8
17
75
18
53
56
0
0
43
0.99
108342--108392
19
2.5
19
79
17
57
78
0
0
21
0.75
108333--108423
8
11.9
8
70
18
52
71
2
2
24
1.08
107288--108628
677
2.0
652
84
7
1716
47
6
3
43
1.45
108946--108982
9
4.0
9
86
6
56
0
16
0
83
0.64
109237--109278
21
2.0
21
86
9
59
64
0
0
35
0.94
109437--109484
22
2.2
22
88
7
71
58
6
0
35
1.23
110771--110863
32
2.9
31
68
13
73
43
2
0
54
1.12
110785--110843
17
3.7
16
75
8
57
37
1
0
61
1.07
110806--110860
26
2.1
26
86
6
76
38
1
0
60
1.08
111797--111838
13
3.1
13
86
6
57
71
2
0
26
0.98
114020--114052
5
6.6
5
100
0
66
60
0
0
39
0.97
114204--114232
3
10.0
3
92
7
51
65
0
0
34
0.93
114258--114285
2
14.0
2
100
0
56
50
0
0
50
1.00
116103--116142
17
2.2
19
86
8
57
40
0
7
52
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
116835--116873
21
1.9
19
90
10
60
46
0
2
51
1.14
117609--117659
16
3.2
16
71
17
52
47
0
0
52
1.00
117861--117906
9
5.1
9
75
19
51
30
0
0
69
0.89
117862--117906
18
2.5
17
89
10
72
28
0
0
71
0.87
118614--118638
6
4.2
6
100
0
50
16
48
16
20
1.82
119533--119716
32
5.7
32
72
22
145
45
1
0
52
1.14
119536--119718
100
1.8
100
98
0
357
45
1
0
51
1.14
119541--119692
46
3.1
46
68
23
139
44
1
0
53
1.13
126634--126717
30
2.9
29
72
12
82
44
3
0
52
1.18
127584--127654
26
2.8
26
74
22
71
46
0
1
52
1.09
127771--127809
9
4.3
9
83
9
53
10
0
2
87
0.65
127771--127810
17
2.4
17
95
0
71
12
0
2
85
0.71
127771--127818
17
2.8
17
90
3
69
14
0
2
83
0.74
128595--128625
16
1.9
16
93
0
53
61
0
3
35
1.12
128593--128634
17
2.5
17
81
18
52
64
0
2
33
1.07
128594--128636
16
2.6
16
81
7
50
62
0
2
34
1.08
128687--128735
25
2.0
24
84
15
64
42
2
0
55
1.11
128973--129008
2
18.0
2
100
0
72
50
0
0
50
1.00
130717--130745
11
2.6
11
100
0
58
68
0
0
31
0.89
130899--130929
12
2.6
12
100
0
62
45
19
16
19
1.86
131702--131727
2
13.0
2
100
0
52
0
50
0
50
1.00
131922--131951
2
15.0
2
92
0
51
46
0
3
50
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
133399--133425
13
2.1
13
100
0
54
48
0
0
51
1.00
134596--134632
2
18.5
2
100
0
74
48
0
0
51
1.00
136034--136059
2
13.0
2
100
0
52
50
0
0
50
1.00
139502--139544
2
21.5
2
90
0
68
44
0
0
55
0.99
140209--140248
3
13.7
3
94
5
73
32
0
0
67
0.91
140696--140728
15
2.1
16
88
5
50
36
0
0
63
0.95
140689--140732
21
2.0
22
83
12
56
36
0
0
63
0.95
142735--142813
19
4.1
19
68
20
56
44
1
2
51
1.23
142803--142850
14
3.5
14
74
5
53
35
0
0
64
0.94
143343--143394
26
2.0
26
84
3
68
57
1
0
40
1.10
150226--150275
16
3.1
17
75
16
52
60
2
0
38
1.09
150296--150336
19
2.2
19
91
4
66
63
2
2
31
1.20
152378--152403
2
13.0
2
100
0
52
50
0
50
0
1.00
153853--153898
24
2.0
22
84
16
58
34
4
17
43
1.69
154314--154354
3
13.7
3
100
0
82
68
0
0
31
0.90
154789--154827
15
2.8
14
85
11
53
71
0
2
25
0.98
155823--155874
17
3.0
17
75
5
50
59
9
3
26
1.46
156549--156605
27
2.2
25
81
12
62
66
1
0
31
1.02
156653--156712
8
7.5
8
74
12
52
1
16
0
81
0.77
156656--156708
21
2.5
21
77
19
65
1
15
0
83
0.74
156656--156708
22
2.5
20
79
14
63
1
15
0
83
0.74
156670--156714
11
3.9
12
80
8
58
0
20
0
80
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
156649--156712
23
2.8
24
77
17
75
1
17
0
81
0.77
156887--156942
21
2.8
19
79
15
60
35
1
0
62
1.06
156920--156975
29
1.9
28
85
7
76
41
1
1
55
1.21
157153--157195
21
2.1
20
82
4
50
53
0
0
46
1.00
157381--157459
29
2.7
30
81
13
85
63
1
0
35
1.03
157410--157459
17
3.0
17
75
11
50
64
0
0
36
0.94
157607--157640
13
2.5
14
95
4
61
55
0
0
44
0.99
157624--157663
21
1.9
22
90
10
66
62
0
0
37
0.95
160304--160335
11
2.9
11
90
0
55
18
3
0
78
0.89
162958--163130
84
2.1
84
95
0
310
34
15
19
30
1.93
163801--163879
40
2.0
40
84
0
104
32
21
12
32
1.91
165047--165079
13
2.4
14
90
5
50
63
3
0
33
1.10
170004--170097
8
11.2
8
72
24
54
36
1
1
61
1.10
170005--170077
10
7.9
10
72
23
54
41
0
1
57
1.07
170004--170072
27
2.5
28
88
4
113
42
0
1
56
1.08
172363--172415
2
26.5
2
81
7
54
47
5
0
47
1.26
172363--172415
26
2.0
26
85
7
72
47
5
0
47
1.26
174120--174164
17
2.7
18
76
13
51
40
4
0
55
1.20
174129--174177
23
2.1
25
85
11
68
40
6
0
53
1.26
174162--174201
14
3.0
14
80
20
50
40
7
2
50
1.44
175853--175906
29
1.9
27
85
7
72
42
0
1
55
1.10
175926--175975
25
2.0
25
84
7
66
46
0
0
54
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
177892--177924
13
2.6
13
90
4
50
57
0
0
42
0.98
177892--177948
10
5.0
11
76
20
55
56
0
0
43
0.99
178407--178482
21
3.6
21
77
16
68
55
3
1
39
1.27
178506--178543
15
2.5
15
84
16
51
68
0
0
31
0.90
178829--178957
41
3.1
41
86
8
174
52
0
0
46
1.05
179092--179125
2
17.5
2
87
6
52
50
2
0
47
1.16
179455--179504
22
2.3
22
78
0
55
52
0
2
46
1.12

Tables:   1   2

The End!