genome.fa.s1077.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1077
Parameters: 2 7 7 80 10 50 1000
Length:  143706

Tables:   1   2   

This is table  2  of  2  ( 165 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110974--111073	52	1.9	52	81	4	121	30	23	15	32	1.95
112426--112701	100	2.8	96	81	9	297	38	8	22	29	1.84
115297--115350	20	2.7	20	82	8	56	29	12	14	42	1.83
116669--117134	143	3.1	152	74	13	367	36	18	19	25	1.94
116684--117238	297	1.9	295	80	4	643	37	18	19	25	1.94
116684--117275	295	2.0	295	78	5	615	36	18	19	25	1.94
117744--118460	154	4.6	151	79	8	633	37	20	18	24	1.94
117744--118489	309	2.4	306	78	7	776	37	19	18	24	1.94
120626--120834	81	2.6	79	80	3	213	28	16	30	24	1.97
120786--120853	28	2.4	28	85	4	84	23	17	36	22	1.94
120845--121066	104	2.1	103	80	4	232	33	12	24	29	1.92
120845--121230	52	7.4	51	71	8	204	32	12	25	29	1.93
120740--121235	263	1.9	263	87	2	737	32	13	26	28	1.94
121049--121124	27	2.8	26	90	6	107	22	22	32	22	1.98
123596--123621	13	2.0	13	100	0	52	38	15	15	30	1.88
123575--123641	33	2.0	33	88	0	98	43	16	14	25	1.86
123661--123728	19	3.9	18	76	23	83	38	14	11	35	1.83
123683--123707	13	1.9	13	100	0	50	32	16	16	36	1.90
123664--123726	32	2.0	32	96	0	117	36	15	12	34	1.86
124657--124999	129	2.7	129	85	0	445	11	19	20	47	1.81
125392--125441	26	2.0	24	84	7	64	72	4	0	24	1.02
125416--125453	15	2.7	14	84	8	51	71	0	0	28	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126921--127119	43	4.7	43	74	3	143	31	17	30	20	1.96
127560--128006	55	8.0	54	84	7	579	24	20	27	27	1.99
127560--128001	109	4.0	109	87	5	609	23	20	27	28	1.99
127560--127977	222	1.9	226	89	4	666	23	20	27	27	1.99
131991--132015	13	1.9	13	100	0	50	36	16	16	32	1.90
132080--132104	13	1.9	13	100	0	50	32	16	16	36	1.90
132058--132124	33	2.0	33	88	0	98	40	13	11	34	1.81
132999--133792	49	16.7	49	82	8	970	30	18	26	25	1.98
132989--133792	92	8.5	93	87	8	933	30	18	26	25	1.98
133563--133630	21	3.2	21	62	25	52	27	19	27	25	1.98
133584--133651	22	3.1	22	62	26	54	30	20	25	23	1.98
133792--133931	67	2.1	67	92	5	232	19	16	35	28	1.93
133792--133931	33	4.2	34	91	6	218	19	16	35	28	1.93
133933--134456	33	15.6	34	80	12	475	32	13	34	19	1.90
134136--134228	27	3.2	27	77	16	96	31	15	36	17	1.90
133938--134460	267	2.0	263	85	8	722	31	13	34	20	1.91
134410--134491	30	2.7	31	90	1	121	26	17	29	26	1.97
134002--134498	233	2.2	231	81	10	538	31	13	34	20	1.91
142770--142794	13	1.9	13	100	0	50	36	16	16	32	1.90
142857--142881	13	1.9	13	100	0	50	32	16	16	36	1.90
142836--142901	32	2.0	33	88	2	98	39	13	12	34	1.82
143332--143401	8	8.8	8	74	10	54	0	12	5	81	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143364--143403	15	2.6	15	92	4	62	0	10	5	85	0.75

Tables:   1   2

The End!