genome.fa.s1093.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1093
Parameters: 2 7 7 80 10 50 1000
Length:  216631

Tables:   1   2   

This is table  2  of  2  ( 227 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
139032--139107	29	2.6	28	70	10	64	27	1	14	56	1.46
139189--139467	58	4.8	57	74	9	197	30	9	10	49	1.70
139235--139370	60	2.3	57	84	3	164	28	9	11	50	1.70
139265--139485	117	1.9	117	79	5	250	31	8	10	50	1.66
139324--139486	58	2.8	58	75	11	163	31	7	9	50	1.64
143276--143331	5	12.4	5	76	16	52	64	0	1	33	1.04
143305--143343	17	2.3	17	86	8	53	71	2	0	25	0.98
143368--143397	15	1.9	15	93	6	51	50	0	0	50	1.00
143377--143418	21	2.0	20	86	13	59	52	0	0	47	1.00
143396--143434	15	2.7	15	88	4	53	53	0	0	46	1.00
143424--143458	18	1.9	18	88	11	54	68	0	0	31	0.90
143739--143786	25	2.0	24	87	4	69	6	16	2	75	1.11
144292--144335	20	2.1	21	91	4	72	56	0	4	38	1.20
144306--144395	18	5.5	17	63	23	50	53	0	3	43	1.17
145229--145254	2	13.0	2	100	0	52	50	0	0	50	1.00
146575--146659	24	3.3	26	74	12	77	56	0	1	42	1.07
146641--146719	20	3.9	20	74	8	70	63	0	0	36	0.95
146629--146721	35	2.6	35	76	10	91	61	0	0	38	0.96
146665--146715	22	2.3	22	77	12	59	68	0	0	31	0.90
146628--146716	31	2.9	31	77	12	94	64	0	0	35	0.94
146652--146715	25	2.6	25	82	9	69	65	0	0	34	0.93
147509--147575	24	2.8	25	77	6	75	58	0	1	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147997--148069	23	3.1	24	75	15	64	46	0	0	53	1.00
148672--148714	14	2.8	17	74	25	51	37	0	0	62	0.95
148792--148825	12	3.0	12	87	12	54	38	0	0	61	0.96
148791--148862	25	2.7	27	73	16	69	41	0	0	58	0.98
149267--149332	20	3.3	19	75	17	62	65	0	1	33	1.02
149278--149331	22	2.7	20	81	13	74	66	0	1	31	1.02
149297--149380	32	2.6	32	83	5	89	59	0	2	38	1.10
149324--149382	16	3.6	17	72	21	54	55	0	1	42	1.09
149321--149372	14	3.4	14	73	19	50	53	0	1	44	1.11
149328--149382	17	3.4	16	75	25	53	56	0	1	41	1.10
151073--151174	9	10.8	9	78	14	73	38	0	0	61	0.96
151092--151223	5	25.8	5	69	21	78	40	0	0	59	1.03
151077--151223	11	14.3	11	73	21	108	38	0	0	60	1.02
151073--151208	29	4.6	28	73	15	107	37	0	0	62	0.95
151084--151180	28	3.6	27	84	10	117	39	0	0	60	0.97
151099--151171	39	1.9	37	84	13	96	42	0	0	57	0.98
151077--151213	21	6.2	22	74	17	65	37	0	0	61	1.01
151460--151506	24	2.0	25	83	8	62	51	0	0	48	1.00
152205--152255	13	3.8	13	74	10	50	72	0	0	27	0.85
152182--152234	18	2.9	17	78	10	61	73	0	1	24	0.93
152180--152255	39	1.9	39	81	5	91	73	0	1	25	0.91
152345--152373	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152398--152449	6	8.5	6	79	10	52	73	0	0	26	0.84
152390--152449	30	2.0	31	83	9	79	70	0	1	28	0.97
152401--152467	23	2.8	24	80	17	70	70	0	0	29	0.88
152535--152565	10	2.9	11	90	9	55	61	0	0	38	0.96
152748--152796	21	2.4	20	82	3	62	63	0	2	34	1.06
152815--152880	16	4.2	16	72	3	53	60	1	0	37	1.06
152807--152885	32	2.5	32	82	10	90	59	1	0	39	1.06
152747--152905	47	3.4	48	72	16	120	59	0	0	38	1.07
152830--152905	17	4.5	17	73	17	61	65	1	0	32	1.01
152831--152902	32	2.2	33	80	11	87	65	1	0	33	1.02
153367--153421	21	2.6	21	82	0	65	38	5	3	52	1.42
154593--154806	112	1.9	112	95	1	385	41	24	7	27	1.80
154875--154910	2	18.0	2	100	0	72	50	0	0	50	1.00
155334--155387	16	3.4	16	75	10	56	35	5	11	48	1.62
156418--156451	8	4.2	8	88	0	50	50	11	0	38	1.39
157163--157197	3	11.7	3	100	0	70	31	0	0	68	0.90
157342--157385	17	2.6	17	85	3	54	34	0	2	63	1.07
162095--162132	2	19.0	2	94	0	67	47	0	2	50	1.15
165077--165123	24	2.0	23	84	8	60	53	2	0	44	1.12
168293--168343	17	3.1	17	91	2	77	72	0	0	27	0.85
168290--168376	24	3.6	25	73	16	76	70	0	0	29	0.88
168293--168376	17	5.1	17	77	8	68	71	0	0	28	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170729--171147	225	1.9	219	82	8	517	43	15	14	26	1.85
178121--178157	16	2.2	18	86	13	53	54	5	10	29	1.57
178240--178329	31	2.8	32	79	8	101	54	0	1	44	1.07
178265--178330	16	4.2	16	75	19	50	54	0	1	43	1.09
178519--178568	17	3.1	17	72	16	52	42	0	0	58	0.98
178524--178600	16	4.8	16	74	7	57	36	0	5	58	1.21
178591--178636	22	2.2	20	84	7	56	50	4	0	45	1.21
178794--178834	20	2.0	21	85	4	57	46	2	2	48	1.28
178950--178979	12	2.4	13	94	5	53	83	0	3	13	0.77
179167--179256	18	4.8	19	79	17	100	41	0	0	58	0.98
179170--179230	27	2.3	27	80	20	76	39	0	0	60	0.97
179167--179250	29	2.9	29	80	18	104	40	0	0	59	0.97
179194--179251	8	7.5	8	74	18	52	43	0	0	56	0.99
179167--179291	18	7.0	18	70	22	61	41	0	0	57	1.04
180108--180160	18	2.9	17	78	21	63	47	0	0	52	1.00
180096--180192	32	3.0	31	73	20	74	46	0	0	53	1.00
180176--180252	36	2.1	37	81	11	97	54	2	0	42	1.14
180827--180917	44	2.1	44	87	0	128	51	1	4	42	1.29
180888--180948	30	2.0	31	100	0	108	54	0	3	42	1.17
180891--180957	30	2.5	24	71	24	62	55	0	2	41	1.15
183915--183947	17	1.9	17	93	0	57	57	9	12	21	1.62
184741--184781	21	2.0	21	90	9	66	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
184764--184790	14	1.9	14	100	0	54	29	0	0	70	0.88
184733--184814	35	2.5	32	76	6	83	40	0	0	59	0.97
186541--186576	12	3.1	12	92	4	56	33	0	0	66	0.92
187355--187413	2	30.5	2	79	6	68	54	1	0	44	1.10
188425--188467	13	3.4	13	87	12	63	41	0	2	55	1.12
189758--189796	20	1.9	21	94	5	71	43	0	2	53	1.14
193650--193688	16	2.4	15	84	16	51	43	2	5	48	1.38
194700--194743	13	3.4	14	76	17	51	72	0	0	27	0.85
195087--195124	12	3.2	12	88	3	51	89	2	5	2	0.64
196849--196891	2	21.5	2	100	0	86	51	0	0	48	1.00
198124--198216	3	31.7	3	90	4	145	64	2	1	32	1.12
198215--198240	3	8.7	3	100	0	52	34	0	0	65	0.93
206709--206825	16	6.8	18	69	24	67	41	2	0	55	1.13
206709--206820	15	6.6	16	69	25	54	41	2	0	55	1.14
206795--206867	29	2.4	31	80	15	80	43	1	0	54	1.08
207153--207180	2	14.0	2	100	0	56	50	0	0	50	1.00
207723--207904	90	2.0	90	92	2	303	40	12	9	37	1.76
207860--208022	70	2.3	70	87	2	229	35	14	12	36	1.85
213670--213709	2	20.0	2	89	0	62	45	0	2	52	1.14

Tables:   1   2

The End!