genome.fa.s1095.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1095
Parameters: 2 7 7 80 10 50 1000
Length:  100126

Tables:   1   

This is table  1  of  1  ( 104 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
359--434	33	2.2	36	81	15	97	47	2	0	50	1.15
391--449	30	2.0	29	83	9	75	47	1	1	49	1.21
466--617	46	3.2	48	72	21	124	48	0	0	51	1.05
521--598	23	3.2	23	70	12	59	50	0	0	50	1.00
330--524	107	1.8	106	84	9	245	44	2	1	51	1.22
480--560	41	2.0	39	81	15	94	48	1	0	50	1.08
478--568	44	2.0	46	82	14	111	47	1	0	51	1.07
540--584	18	2.4	19	85	3	65	48	0	0	51	1.00
2894--2963	29	2.4	29	79	11	74	44	4	14	37	1.65
3992--4068	32	2.3	33	82	6	84	40	5	2	51	1.38
4026--4071	18	2.4	19	82	14	58	36	4	4	54	1.40
15855--15914	30	2.0	31	81	15	72	48	1	0	50	1.11
16156--16190	16	2.1	17	89	5	54	51	5	0	42	1.25
16734--16814	20	4.2	20	73	19	73	62	0	1	35	1.03
16729--16814	39	2.2	39	83	6	111	62	0	1	36	1.03
16838--16874	19	1.9	19	94	0	65	51	2	0	45	1.15
17687--17729	18	2.3	18	81	14	52	46	0	2	51	1.13
18698--18762	21	3.1	21	79	18	73	43	1	0	55	1.09
18958--18992	18	2.0	17	88	5	52	60	0	0	40	0.97
18961--19021	32	1.9	31	87	9	88	57	1	0	40	1.08
18944--19047	19	5.7	19	66	20	60	58	1	1	37	1.20
19460--19493	18	1.9	18	88	5	52	41	5	5	47	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
19835--19905	10	7.2	10	71	16	51	50	1	0	47	1.09
19823--19910	24	3.6	24	71	17	81	50	1	0	48	1.08
19990--20014	8	3.1	8	100	0	50	60	0	0	40	0.97
20888--20926	11	3.8	10	87	12	53	23	0	2	74	0.94
20888--20928	20	2.0	22	90	9	68	24	0	2	73	0.96
21994--22023	2	15.0	2	100	0	60	50	0	0	50	1.00
22410--22460	9	5.8	9	81	2	59	72	0	0	27	0.85
22409--22460	18	2.9	19	83	11	74	71	0	0	28	0.87
23349--23498	79	1.9	82	81	6	191	45	4	2	47	1.37
23874--23927	16	3.4	16	70	10	56	48	0	1	50	1.11
23877--23945	32	2.3	31	85	11	92	52	0	1	46	1.09
27833--27868	3	12.0	3	87	0	54	63	2	2	30	1.22
29336--29374	17	2.4	17	86	4	53	43	0	2	53	1.14
29937--30146	50	4.2	51	82	7	234	36	19	13	30	1.90
29939--30146	100	2.1	100	83	3	258	36	19	13	31	1.90
33545--33605	26	2.3	26	85	2	77	13	34	16	36	1.87
34548--34706	50	3.2	50	89	0	237	35	20	15	28	1.93
35655--35714	27	2.2	27	100	0	120	36	0	16	46	1.47
35783--35858	39	1.9	39	100	0	152	39	15	5	39	1.70
37245--37287	15	2.9	15	83	16	54	58	6	0	34	1.25
39270--39341	23	3.0	22	80	11	63	51	1	0	47	1.09
39284--39343	20	3.1	19	77	17	61	46	1	0	51	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41523--41563	22	1.9	22	90	5	66	48	9	0	41	1.36
44606--44631	2	13.0	2	100	0	52	50	0	0	50	1.00
45054--45087	2	17.0	2	100	0	68	50	0	0	50	1.00
46498--46527	2	15.0	2	100	0	60	0	0	50	50	1.00
47336--47373	15	2.6	15	91	4	60	50	0	0	50	1.00
47336--47373	10	3.9	10	82	3	51	50	0	0	50	1.00
48010--48037	2	14.0	2	100	0	56	50	0	0	50	1.00
50475--50501	13	2.1	13	100	0	54	22	29	29	18	1.97
55160--55291	28	4.9	27	71	23	93	61	1	0	36	1.11
55140--55235	39	2.5	39	83	6	106	63	3	1	32	1.17
55226--55312	32	2.8	30	84	10	106	59	1	0	39	1.05
55794--55846	19	2.9	18	81	15	72	64	0	0	35	0.94
56229--56256	14	2.0	14	100	0	56	35	0	0	64	0.94
56553--56607	20	2.9	18	80	17	58	41	1	0	56	1.10
56553--56588	18	2.0	18	89	10	56	38	0	0	61	0.96
56819--56854	17	2.1	17	90	10	56	63	0	2	33	1.08
56895--56934	21	2.0	20	85	5	53	50	0	5	45	1.23
57430--57507	19	4.2	19	74	11	63	39	1	1	57	1.15
57460--57510	20	2.5	20	84	6	59	45	0	0	54	0.99
57909--57940	5	6.6	5	92	7	57	15	0	0	84	0.63
57908--57941	9	3.7	9	88	7	50	17	0	0	82	0.67
57909--57940	14	2.2	15	94	5	57	15	0	0	84	0.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59204--59256	13	4.2	12	80	4	52	58	0	0	41	0.98
59229--59295	29	2.3	28	76	16	66	65	0	1	32	1.02
59960--60015	28	2.0	28	86	6	78	44	3	0	51	1.18
59939--60013	34	2.2	34	77	13	82	44	1	0	54	1.08
60620--60655	15	2.3	16	90	4	56	52	0	2	44	1.15
60626--60666	20	2.2	19	87	12	59	51	0	4	43	1.23
60680--60712	16	2.0	17	88	5	50	39	0	0	60	0.97
62560--62598	2	20.0	2	94	5	71	48	0	0	51	1.00
73125--73545	209	2.0	209	96	0	779	36	21	14	27	1.93
73873--73906	2	17.0	2	100	0	68	50	0	0	50	1.00
74953--74984	11	2.8	11	95	4	55	59	0	0	40	0.97
75326--75377	12	3.7	15	71	23	51	44	0	1	53	1.11
75373--75412	20	2.1	20	90	9	66	72	0	0	27	0.85
75475--75590	61	1.9	61	81	10	139	43	12	15	28	1.82
75747--75801	21	2.5	22	80	16	62	43	1	3	50	1.30
76277--76303	2	13.5	2	100	0	54	51	0	0	48	1.00
77166--77223	18	3.1	19	73	22	50	50	3	0	46	1.18
77176--77259	24	3.7	24	68	22	65	45	2	0	52	1.13
77167--77253	42	2.0	43	88	2	131	47	2	0	50	1.13
78742--78780	20	2.0	20	85	14	55	35	5	2	56	1.35
79995--80049	22	2.5	22	76	5	58	63	0	1	34	1.05
80853--81037	102	1.8	101	83	3	246	51	4	4	38	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81606--81632	14	1.9	14	100	0	54	44	0	0	55	0.99
82431--83551	559	2.0	559	99	0	2217	25	13	18	42	1.87
91231--91268	2	19.5	2	94	5	69	47	0	0	52	1.00
92581--92642	22	2.8	23	83	9	67	62	0	0	37	0.95
92684--92727	17	2.5	18	77	7	54	45	2	0	52	1.13
93049--93084	6	6.0	6	93	0	63	30	33	16	19	1.94
93320--93352	11	2.9	11	95	4	57	51	0	0	48	1.00
93325--93364	14	3.1	14	86	10	50	42	0	0	57	0.98
93614--93655	22	2.0	22	90	4	68	54	0	0	45	0.99
95206--95234	2	14.5	2	100	0	58	51	0	0	48	1.00
96990--97026	20	1.9	20	88	5	58	51	0	0	48	1.00
97314--97348	16	2.2	16	89	0	52	45	0	2	51	1.16
97597--97622	2	13.0	2	100	0	52	50	0	0	50	1.00
98088--98113	2	13.0	2	100	0	52	50	0	0	50	1.00
98527--98574	16	2.8	17	81	9	53	31	6	0	62	1.20
99825--99860	18	1.9	19	88	5	56	69	0	0	30	0.89

Tables:   1

The End!