genome.fa.s1101.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1101
Parameters: 2 7 7 80 10 50 1000
Length:  279791

Tables:   1   2   

This is table  2  of  2  ( 166 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141991--142453	34	14.0	33	76	9	372	18	31	12	38	1.87
142460--143205	49	15.8	49	75	10	583	25	25	17	31	1.97
142613--142779	87	1.9	87	93	0	289	25	23	20	29	1.99
142460--143110	135	4.7	135	80	8	687	25	25	17	31	1.97
142747--142915	88	1.9	87	89	1	257	24	25	19	30	1.98
149122--149176	20	2.8	20	100	0	110	40	10	14	34	1.81
149263--149314	13	3.5	13	73	26	50	36	17	13	32	1.89
149271--149333	19	3.7	18	76	24	73	36	17	12	33	1.88
149263--149335	32	2.3	32	97	0	137	35	17	12	34	1.88
152477--152509	17	1.9	17	100	0	66	39	18	12	30	1.87
152491--152521	13	2.5	13	94	5	55	41	16	12	29	1.85
154890--155190	32	9.4	32	71	9	123	41	12	23	22	1.88
155036--155158	63	1.9	64	86	1	176	43	13	21	21	1.86
154913--155196	64	4.4	64	74	9	229	42	12	22	22	1.87
159334--159359	13	2.0	13	100	0	52	30	7	15	46	1.74
167083--167123	21	1.9	22	90	5	66	41	17	19	21	1.90
167824--167949	52	2.4	52	93	0	216	27	18	18	35	1.94
167824--167966	52	2.8	52	89	2	180	28	17	18	34	1.94
172644--172902	95	2.7	93	83	10	326	38	11	21	28	1.88
176444--176499	20	2.8	20	97	0	103	42	8	14	33	1.77
178354--178379	13	2.0	13	100	0	52	38	15	15	30	1.88
185124--185204	20	4.0	21	74	9	69	45	9	7	37	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185248--185286	20	2.0	19	85	5	51	30	17	7	43	1.77
189817--189908	20	4.7	19	77	12	80	29	14	16	40	1.87
189817--189908	39	2.3	39	80	10	107	29	14	16	40	1.87
198538--198564	13	2.1	13	100	0	54	29	14	14	40	1.86
198650--198674	13	1.9	13	100	0	50	36	16	16	32	1.90
205948--205984	13	2.8	13	95	0	65	37	16	13	32	1.87
210487--210521	15	2.3	15	95	0	61	28	28	0	42	1.56
215795--215838	18	2.4	19	85	11	65	84	6	2	6	0.86
217033--217278	28	8.8	28	91	0	393	29	31	17	21	1.96
217035--217743	57	12.6	56	84	8	829	29	30	17	22	1.97
217237--217323	45	2.0	44	90	6	140	34	26	18	20	1.96
217282--217724	28	15.4	28	85	6	494	29	30	17	23	1.97
217209--217438	73	3.0	72	80	12	244	30	31	17	20	1.96
218630--218744	20	5.8	20	84	0	149	33	13	13	40	1.84
218630--218743	40	2.8	40	95	0	201	33	13	14	39	1.84
222925--222998	20	3.7	20	90	0	112	45	12	13	28	1.79
224872--224905	13	2.6	13	80	0	50	88	8	2	0	0.62
224861--224906	21	2.1	22	88	4	67	82	10	6	0	0.83
226117--226663	272	2.0	272	87	1	792	37	16	19	26	1.92
227536--227612	20	3.8	20	84	0	109	31	12	12	42	1.81
237943--238071	52	2.5	52	92	0	222	27	16	18	37	1.92
238144--238225	19	4.6	19	74	20	88	37	17	10	34	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
238161--238224	32	2.0	33	90	3	103	35	17	10	35	1.85
238392--279388	508	80.5	508	92	3	67480	27	19	24	27	1.99

Tables:   1   2

The End!