genome.fa.s1155.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1155
Parameters: 2 7 7 80 10 50 1000
Length:  53438

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1617--15161	476	28.3	476	78	7	12182	31	18	14	35	1.91
5292--5482	106	1.8	106	87	0	283	32	18	13	35	1.90
19583--19645	33	1.9	33	96	0	117	15	41	0	42	1.47
19584--19652	33	2.1	33	91	0	111	15	42	0	42	1.47
21759--21822	12	5.9	11	77	15	55	40	0	45	14	1.44
21758--21827	9	7.8	9	70	17	56	42	0	42	14	1.45
21762--21855	42	2.2	42	88	3	136	41	1	44	12	1.49
30571--30689	42	2.8	42	92	0	193	8	46	2	42	1.47
30604--30679	12	6.9	11	75	15	52	9	48	2	39	1.49
30595--30680	24	3.8	24	72	17	85	10	45	2	41	1.51
30586--30656	18	3.6	18	69	20	52	9	43	2	43	1.52
34696--40685	476	12.6	476	84	2	6745	30	18	14	35	1.91
34696--40688	950	6.3	952	82	3	6652	30	18	14	35	1.91
36974--37617	159	4.1	159	66	11	350	30	18	15	36	1.91
39310--40467	159	7.3	156	67	14	426	32	18	14	35	1.90
40694--42624	475	4.1	476	83	3	2252	35	13	18	31	1.90
41276--42418	158	7.2	156	67	13	492	35	14	18	31	1.91
40899--42603	159	10.8	155	67	15	523	35	13	18	31	1.90
43452--43515	32	2.0	32	84	9	85	37	15	18	28	1.92
48762--48846	19	4.7	19	73	19	65	37	12	16	32	1.87
48784--48859	32	2.4	32	90	0	116	35	14	17	32	1.90
48898--48923	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48878--48940	33	1.9	33	86	0	90	28	15	17	38	1.91
49035--49288	124	2.0	124	95	0	463	34	20	16	28	1.95

Tables:   1

The End!