Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold116
Parameters: 2 7 7 80 10 50 1000
Length:  1263769

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 557 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1184204--1184285
27
2.9
28
78
10
87
40
0
6
53
1.26
1189975--1190027
19
2.7
20
88
2
81
33
13
15
37
1.86
1190070--1190094
13
1.9
13
100
0
50
32
16
16
36
1.90
1190049--1190115
34
2.0
33
85
8
91
28
17
14
38
1.90
1190114--1190163
24
2.1
24
96
0
91
30
18
26
26
1.98
1194563--1194592
2
15.0
2
92
0
51
46
0
3
50
1.18
1201099--1201130
2
16.0
2
100
0
64
50
0
0
50
1.00
1211809--1211843
2
17.5
2
100
0
70
48
0
0
51
1.00
1211928--1211956
3
9.7
3
100
0
58
31
0
0
68
0.89
1212297--1212337
2
20.5
2
94
0
73
51
0
0
48
1.00
1212430--1212461
3
10.7
3
100
0
64
34
0
0
65
0.93
1216949--1216978
2
15.0
2
92
0
51
53
0
0
46
1.00
1219561--1219596
3
12.0
3
100
0
72
66
0
0
33
0.92
1220769--1220860
25
3.8
25
71
16
77
45
0
0
54
0.99
1220804--1220875
30
2.4
30
82
11
85
50
1
0
48
1.09
1220768--1220843
24
2.9
27
69
15
70
43
0
0
56
0.99
1220821--1220874
14
3.8
13
79
15
54
53
1
0
44
1.11
1220886--1220921
18
2.0
18
88
0
54
50
0
0
50
1.00
1225878--1225914
2
18.5
2
100
0
74
51
0
0
48
1.00
1228223--1228253
2
15.5
2
93
0
53
54
0
0
45
0.99
1228223--1228268
20
2.3
20
88
0
65
50
0
2
47
1.13
1233358--1233390
2
16.5
2
100
0
66
51
0
0
48
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1238683--1238715
14
2.4
14
94
0
57
33
0
24
42
1.55
1238863--1238964
14
7.3
14
71
8
73
34
0
26
38
1.63
1238921--1238964
7
6.3
7
86
0
61
31
0
27
40
1.56
1238911--1238964
21
2.6
21
79
5
65
33
0
25
40
1.56
1238961--1239386
7
62.4
7
81
8
303
7
1
50
39
1.41
1241678--1241734
22
2.6
22
94
2
98
64
8
8
17
1.46
1242644--1242718
20
3.8
20
80
3
80
40
12
13
34
1.81
1242641--1242718
40
2.0
39
87
2
111
39
12
12
34
1.82
1242917--1242957
15
2.8
14
85
7
55
17
0
43
39
1.49
1242918--1242997
7
10.8
8
73
10
55
10
5
48
36
1.58
1242955--1243198
7
34.9
7
75
9
122
5
8
52
33
1.54
1243088--1243125
20
1.9
20
88
0
58
5
0
47
47
1.24
1242917--1243282
139
2.6
137
81
7
367
7
6
50
36
1.55
1243198--1244151
7
134.4
7
78
14
300
3
5
46
44
1.42
1243446--1250007
29
225.7
27
71
19
1354
4
13
41
41
1.63
1243445--1250010
7
891.3
7
76
17
5185
4
13
41
41
1.63
1244025--1244383
103
3.4
103
78
18
263
4
13
39
42
1.64
1249715--1249744
10
3.0
10
100
0
60
0
10
30
60
1.30
1249725--1250010
15
19.4
16
79
11
164
2
14
40
41
1.59
1250071--1250632
1
562.0
1
65
0
242
3
82
1
12
0.86
1250071--1251204
7
156.9
7
74
15
738
6
78
2
11
1.03
1250072--1251204
96
11.4
96
71
18
574
6
78
2
11
1.03
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1250071--1250879
18
43.8
18
70
20
180
5
80
1
12
0.97
1250753--1251014
144
1.9
137
79
11
289
11
74
2
11
1.16
1250117--1251201
564
1.9
561
80
12
1259
6
78
2
11
1.03
1251207--1251254
25
1.9
25
83
8
62
37
45
10
6
1.64
1251273--1256283
7
718.4
7
72
15
2102
40
46
5
7
1.57
1251327--1255593
68
63.8
67
67
19
312
40
45
5
7
1.58
1253442--1253467
11
2.4
11
100
0
52
88
11
0
0
0.52
1253816--1253867
25
2.2
23
86
6
68
51
38
7
1
1.42
1253812--1254008
23
8.7
23
70
19
71
43
42
6
7
1.58
1253878--1253935
16
3.8
16
86
4
75
44
43
5
6
1.53
1253895--1255967
27
77.6
27
70
18
416
41
44
6
7
1.58
1254653--1254721
11
7.0
10
69
30
51
46
42
11
0
1.40
1255828--1255972
13
11.5
12
68
20
61
40
46
8
4
1.53
1255991--1256077
29
3.0
28
71
23
74
50
40
6
2
1.42
1256049--1256091
20
2.2
20
91
0
68
48
39
6
4
1.51
1256155--1256303
13
10.9
13
76
12
66
40
51
4
4
1.40
1256117--1256305
51
3.7
52
76
11
131
40
50
4
4
1.43
1255054--1256640
7
228.6
7
72
14
490
40
49
4
4
1.46
1256696--1256732
16
2.3
17
86
13
60
32
56
5
5
1.45
1256722--1256983
7
37.6
7
77
12
211
33
51
12
2
1.53
1256333--1256983
21
31.3
21
75
16
240
35
57
5
2
1.34
1258220--1258275
22
2.6
22
86
13
82
17
8
8
64
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1258220--1258274
21
2.6
23
88
11
82
16
9
9
65
1.46
1260541--1260961
7
60.6
7
74
14
112
40
48
1
9
1.44
1260628--1260879
87
2.9
84
77
11
212
40
51
0
8
1.33
1260541--1260927
35
11.3
34
69
15
190
40
50
1
7
1.41
1260825--1260894
22
3.2
21
84
8
77
37
54
0
8
1.31
1260644--1260894
15
17.3
15
70
14
100
40
50
0
9
1.34
1260839--1260908
22
3.2
21
78
8
59
40
50
0
10
1.36
1260541--1260927
14
27.7
14
73
11
217
40
50
1
7
1.41
1260927--1260966
13
2.9
14
85
7
64
37
30
0
32
1.58
1260927--1260965
7
5.7
7
81
6
53
38
30
0
30
1.58
1260927--1260989
13
4.8
13
74
3
63
39
28
0
31
1.57

Tables:   1   2   3   4   5

The End!