genome.fa.s1181.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1181
Parameters: 2 7 7 80 10 50 1000
Length:  580274

Tables:   1   2   

This is table  2  of  2  ( 190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
486534--487206	34	21.0	32	72	15	461	21	32	12	34	1.90
486628--487129	27	16.2	27	66	24	162	22	32	11	33	1.91
486535--487159	61	9.9	61	81	10	352	22	32	12	33	1.90
486561--487190	157	4.0	152	84	8	657	22	32	12	33	1.91
487204--487281	28	2.6	31	75	15	85	35	25	17	20	1.95
487307--487858	49	11.4	49	78	10	505	24	25	17	31	1.97
487307--487757	92	4.8	92	83	11	502	24	26	18	31	1.98
487611--487809	101	2.0	102	90	1	319	25	26	17	31	1.97
488540--488590	19	2.7	19	96	0	93	31	11	17	39	1.86
488676--488804	52	2.5	52	87	0	186	37	17	15	29	1.90
492053--492162	55	2.0	55	96	0	202	38	16	14	30	1.89
492779--492888	55	2.0	55	98	0	211	38	19	13	29	1.90
491483--492941	726	2.0	728	98	0	2805	32	19	16	30	1.95
497406--497499	20	4.8	19	73	11	64	39	14	14	30	1.87
499602--499677	12	6.9	11	74	18	61	38	1	50	10	1.45
499601--499710	42	2.6	42	89	0	175	40	1	48	10	1.47
499646--499691	12	3.9	12	81	13	51	43	0	43	13	1.43
504720--504744	13	1.9	13	100	0	50	12	0	0	88	0.53
504938--504962	11	2.3	11	100	0	50	76	0	0	24	0.80
504914--504983	30	2.3	30	88	9	99	68	1	1	28	1.06
504911--504983	6	12.2	6	76	16	55	67	1	1	30	1.08
506047--513326	475	15.3	475	83	2	8538	36	14	18	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
506082--513012	158	43.8	157	65	14	1457	36	14	18	30	1.91
514100--514125	13	2.0	13	100	0	52	30	15	15	38	1.88
514081--514143	32	1.9	33	90	3	101	28	14	15	41	1.87
514789--514886	40	2.5	40	86	3	119	30	25	7	36	1.83
516252--516294	20	2.1	20	82	4	50	9	27	44	18	1.80
516726--516763	13	2.9	13	92	0	58	34	15	15	34	1.90
522920--522971	19	2.7	20	87	6	79	28	13	15	42	1.85
523666--524785	158	7.1	158	66	12	426	36	14	17	31	1.90
523346--524808	473	3.1	470	89	2	2226	36	14	18	31	1.90
525238--525317	20	4.0	20	70	8	63	31	15	12	41	1.84
525158--525545	91	4.3	91	90	1	589	28	15	11	43	1.82
525329--525403	20	3.8	20	76	0	60	34	10	9	45	1.71
525420--525494	20	3.8	20	81	0	96	30	14	13	41	1.84
529158--529188	15	2.1	15	93	0	53	12	22	16	48	1.80
533264--533289	13	2.0	13	100	0	52	30	15	15	38	1.88
535537--535649	51	2.2	52	81	7	133	33	11	23	31	1.90
535584--535809	79	2.9	79	77	0	236	33	12	25	28	1.93
535661--535937	130	2.1	130	84	4	360	32	11	25	29	1.91
535743--535859	51	2.3	51	86	4	164	31	12	25	29	1.93
535532--535937	209	1.9	209	81	4	480	33	11	25	29	1.91
537747--537778	16	2.0	16	93	0	55	0	9	18	71	1.12
538258--538287	13	2.3	13	100	0	60	40	13	16	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
542540--542567	13	2.2	13	100	0	56	28	14	14	42	1.84
542521--542585	32	2.0	32	87	3	94	29	15	12	43	1.83
542549--542604	19	2.8	20	81	2	69	35	16	8	39	1.80
544522--544572	20	2.6	20	90	3	77	31	13	17	37	1.89
545538--547621	159	13.1	157	66	14	691	30	17	14	36	1.90
545396--548656	474	6.9	471	82	5	3592	31	18	13	37	1.90
547783--549527	870	2.0	870	87	2	2477	31	17	12	38	1.87
548652--550732	474	4.4	472	81	4	2278	31	18	13	37	1.89
550424--551066	334	1.9	331	83	5	814	31	19	14	34	1.92
550738--551706	471	2.1	473	85	3	1290	31	18	13	36	1.90
552103--552128	13	2.0	13	100	0	52	38	15	15	30	1.88
554349--554398	21	2.3	21	80	10	57	56	4	18	22	1.58
555688--556312	159	3.9	159	70	8	432	32	17	12	37	1.88
560695--562784	159	13.2	158	66	13	435	31	18	13	36	1.90
560302--564677	475	9.3	474	82	4	5003	31	18	14	36	1.90
562795--564677	474	4.0	473	83	3	2272	31	17	13	37	1.89
564948--565012	20	3.6	20	67	26	63	29	15	15	40	1.88
565062--565128	33	2.0	33	82	5	82	35	11	17	34	1.87
566722--566753	15	2.1	15	94	0	55	43	0	28	28	1.55
571135--571172	15	2.4	16	82	8	51	36	5	26	31	1.79
571206--571239	18	1.9	17	94	5	59	23	11	11	52	1.70
575099--575174	32	2.4	32	93	0	134	27	19	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
575183--575207	13	1.9	13	100	0	50	36	16	16	32	1.90
575270--575294	13	1.9	13	100	0	50	32	16	16	36	1.90
576634--577797	462	2.5	465	81	9	1382	36	14	17	32	1.89
578586--578640	20	2.8	20	83	8	76	34	10	18	36	1.86

Tables:   1   2

The End!