genome.fa.s1181.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1181
Parameters: 2 7 7 80 10 50 1000
Length:  580274

Tables:   1   2   

This is table  1  of  2  ( 190 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39--1746	158	10.8	159	67	14	637	35	14	18	30	1.92
553--1186	317	2.0	311	83	5	785	34	14	20	29	1.93
49--1864	787	2.3	790	87	2	2589	35	15	18	30	1.92
1864--4165	474	4.9	474	84	3	2902	35	14	19	30	1.92
3485--4782	631	2.1	620	86	4	1808	34	14	19	30	1.92
4135--6555	464	5.2	464	88	4	3663	35	14	19	30	1.92
4155--6555	935	2.6	935	97	0	4450	35	14	19	30	1.92
2169--6353	158	26.7	156	66	14	974	35	14	19	30	1.92
7621--9530	158	12.1	158	65	16	504	35	14	18	30	1.91
7271--9327	475	4.3	472	85	3	2576	36	14	18	30	1.91
10012--13667	473	7.8	472	84	5	4540	35	14	18	30	1.91
11656--12344	159	4.4	155	67	13	360	34	14	19	31	1.91
12996--24030	159	70.2	157	66	12	1694	35	14	19	30	1.92
13027--14934	633	3.0	629	88	1	2810	35	14	19	31	1.91
14293--15882	476	3.4	472	85	3	2079	35	14	19	31	1.91
15211--23411	631	13.1	630	72	11	2918	35	14	19	30	1.92
16487--22781	945	6.7	948	76	8	5281	35	14	19	30	1.92
18807--22781	474	8.4	474	86	2	5117	34	14	19	30	1.92
22741--23874	472	2.4	472	88	1	1702	35	14	19	31	1.92
23195--24509	626	2.1	622	85	3	1708	34	14	18	31	1.92
26019--26307	158	1.8	159	82	4	379	35	15	18	30	1.92
26019--27410	158	8.8	158	67	12	375	35	15	18	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26580--27851	158	8.0	159	66	13	438	35	15	18	30	1.92
25479--26775	625	2.1	624	87	3	1869	35	15	18	30	1.92
26113--27240	468	2.4	467	86	5	1522	35	15	18	30	1.92
26113--27291	475	2.5	464	83	7	1443	35	15	18	30	1.92
26580--27875	635	2.0	633	89	1	1990	35	15	18	29	1.92
27210--28239	469	2.2	473	84	3	1335	35	15	19	30	1.92
34667--34697	15	2.1	15	93	0	53	48	16	22	12	1.80
36712--36791	20	3.8	20	75	15	79	26	15	15	43	1.85
36777--36815	13	3.0	13	96	0	69	30	17	15	35	1.91
36936--36982	21	2.3	21	79	20	55	34	19	4	42	1.70
36938--36980	20	2.2	19	84	16	52	32	18	4	44	1.71
39334--39359	13	2.0	13	100	0	52	38	15	15	30	1.88
40513--40562	20	2.5	21	83	9	68	32	20	14	34	1.92
40632--40656	13	1.9	13	100	0	50	32	16	16	36	1.90
40964--45442	475	9.4	475	74	10	2818	31	18	13	36	1.89
43336--43739	159	2.5	159	81	4	449	33	18	13	34	1.90
44100--44764	348	1.9	347	83	5	867	32	17	12	38	1.86
43619--45265	826	2.0	826	96	0	3046	31	17	12	37	1.88
45222--47709	159	15.7	157	68	12	761	31	18	13	37	1.89
44797--62602	634	28.0	627	70	12	7597	31	18	13	37	1.89
46094--50487	474	9.3	469	79	6	4161	30	18	14	37	1.90
50319--50722	159	2.5	159	81	4	449	33	18	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51431--63610	159	76.6	155	65	14	1809	31	17	13	37	1.89
55011--61340	474	13.3	473	76	8	4558	31	17	13	37	1.89
61995--64273	475	4.8	475	81	4	2436	30	17	14	38	1.89
69257--69375	42	2.8	42	90	0	184	9	45	2	42	1.49
69272--69342	18	3.6	18	69	20	52	9	43	2	43	1.52
71682--75616	475	8.3	476	81	4	4206	30	18	14	36	1.91
76260--76322	32	1.9	32	87	6	90	41	20	11	26	1.86
82635--82680	21	2.2	20	81	11	58	32	19	4	43	1.71
84978--85032	20	2.7	21	85	2	76	38	12	16	32	1.86
406498--406578	33	2.4	33	85	2	108	38	27	8	25	1.85
414075--414128	20	2.7	20	91	5	83	37	18	12	31	1.89
414157--414204	20	2.5	20	89	3	71	33	18	16	31	1.94
414891--414954	33	1.9	34	87	3	94	39	18	12	29	1.88
421095--421159	13	5.0	13	94	0	112	30	18	15	35	1.92
421096--421159	26	2.5	26	100	0	128	31	18	15	34	1.93
422262--422342	39	2.0	40	86	6	112	33	4	27	34	1.78
422987--423012	13	2.0	13	100	0	52	38	15	15	30	1.88
425996--426035	13	3.1	13	88	0	62	42	20	12	25	1.86
426068--426105	20	1.9	20	100	0	76	31	18	10	39	1.85
427164--427621	79	5.8	78	79	9	430	33	13	24	28	1.93
427556--427673	51	2.3	51	88	0	173	30	11	27	30	1.92
427475--427754	130	2.2	130	84	3	350	33	13	25	27	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430065--430168	30	3.4	30	70	7	100	40	16	15	27	1.88
430095--430119	13	1.9	13	100	0	50	40	8	16	36	1.77
430045--430168	63	2.0	63	91	3	205	41	15	14	28	1.86
430776--430997	83	2.6	86	80	10	242	42	10	25	21	1.84
430758--431132	45	8.6	44	78	7	281	41	12	25	21	1.87
430806--431137	89	3.8	87	76	10	259	43	12	25	19	1.85
431128--431857	61	12.0	61	83	6	824	30	18	24	25	1.98
431128--431863	122	6.0	123	86	5	921	30	18	25	25	1.98
431128--431863	245	3.0	244	87	4	1012	30	18	25	25	1.98
432954--433022	10	6.8	10	73	12	52	2	8	5	82	0.92
432954--433022	22	3.1	22	76	13	61	2	8	5	82	0.92
443300--443326	4	6.8	4	100	0	54	77	0	0	22	0.76
445403--445806	79	5.1	79	81	4	361	33	14	24	26	1.94
445763--445838	28	2.7	28	87	0	98	23	21	32	22	1.98
445821--445938	51	2.3	51	85	0	146	31	12	24	31	1.93
445870--446017	79	1.9	79	86	0	215	33	13	23	29	1.93
445791--446041	130	1.9	130	81	4	301	35	12	23	28	1.92
448273--448327	20	2.8	20	80	0	65	47	7	12	32	1.69
451586--451611	13	2.0	13	100	0	52	38	15	15	30	1.88
451737--451873	53	2.6	53	95	1	247	27	17	18	37	1.93
451843--451913	20	3.5	20	77	11	74	29	12	16	40	1.86
451953--451993	21	2.0	21	85	9	57	39	9	12	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454608--454633	13	2.0	13	100	0	52	38	15	15	30	1.88
454590--454653	32	2.0	33	87	3	94	40	17	14	28	1.88
458702--458738	15	2.5	15	90	0	56	48	16	21	13	1.80
460815--460852	13	2.9	13	96	0	67	34	18	15	31	1.92
460973--461018	21	2.2	20	81	11	58	32	19	4	43	1.71
463401--463426	13	2.0	13	100	0	52	38	15	15	30	1.88
463383--463446	32	2.0	33	87	3	94	40	17	14	28	1.88
465787--465840	20	2.7	20	77	5	56	42	16	7	33	1.76
465869--465922	19	2.8	20	91	2	83	37	18	14	29	1.91
465911--465937	13	2.1	13	100	0	54	44	14	18	22	1.86
465892--465954	33	1.9	32	87	9	92	42	15	15	25	1.87
466915--468068	589	2.0	582	83	4	1453	38	15	12	32	1.85
477096--477136	21	2.0	21	85	9	57	39	12	9	39	1.76
477169--477228	20	3.0	21	82	9	79	40	15	15	30	1.87
477323--477353	10	3.1	10	90	0	53	22	29	6	41	1.78
477341--477396	21	2.6	22	88	5	96	28	25	10	35	1.89
477472--477497	13	2.0	13	100	0	52	30	15	23	30	1.95
477976--478042	37	1.9	35	88	11	102	32	11	25	29	1.92
479135--479176	21	2.0	21	85	0	57	42	4	28	23	1.74
479562--479722	84	1.9	84	80	9	186	53	3	17	25	1.60
482786--482826	21	2.0	21	85	9	57	39	12	9	39	1.76
482859--482918	20	3.0	21	82	9	79	40	15	15	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
483013--483043	10	3.1	10	90	0	53	22	29	6	41	1.78
483031--483086	21	2.6	22	88	5	96	28	25	10	35	1.89
483162--483187	13	2.0	13	100	0	52	30	15	23	30	1.95
483666--483732	37	1.9	35	88	11	102	32	11	25	29	1.92
484923--484961	18	2.2	18	85	0	51	74	15	5	5	1.17
484930--484983	25	2.1	26	83	10	67	79	14	1	3	0.95
484949--484983	13	2.6	13	90	4	52	85	11	0	2	0.69
486280--486521	31	7.8	30	80	6	250	24	28	15	30	1.96
486277--486492	95	2.3	94	86	6	303	24	29	15	31	1.95
486282--486521	126	1.9	126	83	6	308	25	28	15	30	1.96

Tables:   1   2