genome.fa.s120.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold120
Parameters: 2 7 7 80 10 50 1000
Length:  299982

Tables:   1   2   

This is table  2  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185730--185948	34	6.5	34	88	1	307	25	7	26	40	1.81
185730--185948	102	2.2	101	93	2	368	25	7	26	40	1.81
187757--187784	3	9.3	3	100	0	56	67	0	0	32	0.91
189631--189753	64	1.9	64	84	3	165	43	7	6	43	1.58
189717--189759	22	2.0	21	81	4	50	51	11	0	37	1.39
191826--191858	15	2.1	17	88	11	52	18	3	3	75	1.06
191954--191990	19	2.0	19	89	5	58	32	0	0	67	0.91
192284--192328	24	2.0	23	82	8	56	31	0	2	66	1.04
192454--192501	14	3.6	14	76	23	50	68	0	0	31	0.90
193521--193578	29	2.0	29	83	10	73	50	0	1	48	1.11
194418--194507	28	3.4	27	82	8	96	24	8	21	45	1.80
197061--197106	21	2.1	22	84	4	58	30	19	30	19	1.97
198986--199056	27	2.6	27	88	6	99	22	7	23	46	1.76
199767--199825	20	2.8	20	85	12	75	40	3	0	55	1.16
201952--202001	23	2.2	23	82	7	57	52	2	0	46	1.12
203803--205464	548	3.0	547	92	1	2742	35	12	13	39	1.82
206386--206423	18	2.1	18	90	5	58	76	2	0	21	0.91
207558--207603	21	2.1	22	84	4	58	43	2	2	52	1.25
208421--208480	28	2.2	27	79	5	66	31	8	3	56	1.45
212531--212565	16	2.1	17	89	5	54	22	5	0	71	1.07
213813--213868	21	2.7	21	86	8	71	37	3	28	30	1.74
220417--220463	3	15.7	3	100	0	94	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
221681--221731	6	8.5	6	88	0	75	68	11	0	19	1.20
221670--221726	30	1.9	30	92	7	98	70	10	0	19	1.16
221718--221759	17	2.7	15	80	20	50	52	7	2	38	1.42
222561--222599	18	2.0	20	85	9	55	66	2	0	30	1.05
223315--223436	61	2.0	61	85	3	165	37	17	15	29	1.90
224989--225071	28	3.0	28	92	0	139	50	19	9	20	1.75
226975--227016	21	2.0	21	85	0	57	19	33	21	26	1.97
231074--231115	20	2.1	20	86	8	59	30	0	7	61	1.22
232549--232591	3	14.3	3	90	0	68	30	2	2	65	1.18
234534--234590	20	2.7	21	86	5	71	70	3	0	26	1.03
234527--234593	26	2.6	26	75	17	68	70	2	0	26	1.02
236522--236575	28	1.9	28	84	0	72	29	9	1	59	1.39
243018--243043	2	13.0	2	100	0	52	50	0	0	50	1.00
245738--245777	18	2.2	19	95	4	73	17	10	0	72	1.11
245738--245785	18	2.4	19	86	13	62	16	8	0	75	1.04
246098--246150	3	17.7	3	100	0	106	32	0	0	67	0.91
247584--247695	56	2.0	57	98	1	217	17	9	17	54	1.69
253185--253248	27	2.3	27	86	7	85	25	7	20	46	1.77
257732--257821	28	3.4	27	80	8	87	25	7	21	45	1.78
262155--262202	20	2.3	20	82	7	51	62	12	4	20	1.46
262516--262541	7	3.7	7	100	0	52	57	0	0	42	0.98
263437--263482	16	2.9	16	78	18	51	45	0	4	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
264040--264078	21	1.9	19	85	10	51	53	2	5	38	1.37
264790--264840	25	2.0	26	96	3	95	62	1	0	35	1.06
265575--265630	3	18.7	3	100	0	112	32	0	0	67	0.91
265642--265686	23	2.0	23	82	8	56	17	17	17	46	1.84
268033--268078	24	1.9	24	90	0	74	43	28	6	21	1.77
268059--268136	28	2.9	28	88	7	108	50	23	5	21	1.69
268962--269007	21	2.1	22	84	4	58	19	30	19	30	1.97
271458--271503	13	3.6	13	76	5	58	39	6	41	13	1.70
271556--271601	24	1.9	24	90	0	74	43	28	6	21	1.77
271582--271658	28	2.8	28	88	7	106	50	23	3	22	1.65
274152--274191	21	1.9	21	84	0	53	57	2	2	37	1.26
275753--275790	19	2.0	20	84	5	51	36	0	2	60	1.11
277595--277637	18	2.7	15	77	19	50	48	9	6	34	1.62
277597--277631	18	1.9	18	100	0	70	51	5	5	37	1.50
280256--280310	28	1.9	27	82	17	67	65	7	3	23	1.34
290223--290279	18	2.8	20	79	17	64	21	14	0	64	1.28
290239--290293	18	3.1	18	71	10	51	16	10	0	72	1.11
292054--292078	13	1.9	13	100	0	50	12	0	8	80	0.92
293134--293284	77	2.0	76	84	3	196	44	9	7	38	1.66
295105--295169	31	2.1	31	91	5	105	21	1	26	50	1.57
295334--295373	21	1.9	21	89	0	62	57	0	5	37	1.21
297574--297637	25	2.6	26	83	11	73	51	0	1	46	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297721--297826	38	2.8	38	100	0	212	21	21	18	37	1.94
297786--297919	50	2.7	50	100	0	268	24	21	17	35	1.95
297982--298029	22	2.0	24	84	15	64	45	2	4	47	1.33
298079--298149	16	4.4	16	78	0	79	42	19	16	21	1.89
299899--299938	20	2.0	20	95	0	71	35	15	17	32	1.91

Tables:   1   2

The End!