Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1200
Parameters: 2 7 7 80 10 50 1000
Length:  192638

Tables:   1   2   

This is table  2  of  2  ( 155 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
146735--147147
150
2.8
148
82
4
531
32
19
25
21
1.97
148239--148449
79
2.7
78
81
7
246
31
14
27
25
1.95
148455--148587
51
2.6
51
74
12
128
31
11
26
30
1.91
150949--150974
13
2.0
13
100
0
52
38
15
15
30
1.88
150961--151002
21
2.0
21
100
0
84
28
19
9
42
1.82
151109--151872
49
15.9
49
76
8
676
25
25
17
32
1.97
151451--151528
39
2.0
39
84
0
102
29
26
19
24
1.98
151316--151665
189
1.9
187
85
3
495
25
26
17
30
1.97
151098--151728
238
2.6
237
93
0
1064
25
25
17
30
1.97
151402--151577
88
2.0
88
92
0
289
26
26
18
28
1.98
151490--151812
150
2.2
148
84
3
405
25
26
17
31
1.97
152604--152656
19
2.7
19
79
5
61
39
13
15
32
1.85
152644--152669
13
2.0
13
100
0
52
38
15
15
30
1.88
152655--152748
40
2.3
40
98
0
179
38
22
17
22
1.93
152735--152810
20
3.8
20
100
0
152
35
14
10
39
1.81
152797--152823
13
2.1
13
100
0
54
29
14
14
40
1.86
152777--152842
33
2.0
33
90
0
105
31
15
12
40
1.83
158441--158471
16
2.0
15
93
6
53
58
0
9
32
1.31
159818--159857
20
2.0
21
90
5
64
35
10
20
35
1.86
159887--159926
13
3.1
13
85
0
62
32
12
15
40
1.84
164974--165007
7
4.9
7
92
0
50
50
5
0
44
1.26
165301--165336
10
3.3
11
88
11
56
80
0
0
19
0.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
168597--168673
21
3.7
21
80
3
93
32
9
22
36
1.85
173732--173775
18
2.4
18
85
7
54
56
11
4
27
1.53
179376--179431
22
2.5
23
97
2
105
62
8
10
17
1.52
180342--180415
20
3.7
20
80
3
78
40
12
13
33
1.82
180339--180415
40
1.9
39
86
2
109
40
12
12
33
1.82
180891--182076
29
41.2
29
88
4
1647
22
17
31
28
1.96
180891--182076
57
20.6
57
88
3
1657
22
17
31
28
1.96
183311--183362
1
52.0
1
76
0
50
0
1
9
88
0.59
183298--183361
17
3.5
18
85
6
67
1
3
9
85
0.76
183318--183362
13
3.5
13
84
6
65
0
0
11
88
0.50
183298--183360
10
5.9
10
76
12
63
1
3
9
85
0.77
183318--183361
12
3.8
12
85
14
65
0
0
11
88
0.51
183311--183363
23
2.3
22
87
9
79
0
1
11
86
0.64

Tables:   1   2

The End!