genome.fa.s1217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1217
Parameters: 2 7 7 80 10 50 1000
Length:  98337

Tables:   1   

This is table  1  of  1  ( 74 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3664--3691	12	2.3	12	100	0	56	42	21	0	35	1.53
8213--8252	18	2.3	18	87	8	57	35	7	20	37	1.81
13559--13611	20	2.7	20	81	0	61	30	22	13	33	1.92
13641--13730	20	4.7	20	74	18	75	40	11	16	32	1.84
13640--13693	19	2.8	20	77	5	65	40	11	16	31	1.84
14624--15706	479	2.3	472	92	2	1765	36	14	17	31	1.90
14987--15662	159	4.2	159	67	10	421	36	14	17	31	1.90
14624--15675	158	6.6	159	66	12	451	36	14	17	30	1.90
17321--17397	12	5.9	12	72	26	59	41	0	44	14	1.45
17312--17430	42	2.8	42	89	0	166	44	0	42	11	1.46
17321--17406	24	3.8	24	73	17	85	43	0	41	15	1.46
17342--17402	9	7.1	9	70	10	56	42	0	42	14	1.46
17366--17411	12	3.9	12	81	13	51	43	0	43	13	1.43
17387--17436	18	2.8	18	81	6	57	46	2	44	8	1.44
21711--28909	159	45.4	159	65	12	1265	36	14	18	30	1.90
21711--31834	953	10.7	948	86	3	12464	36	14	18	30	1.90
21711--28910	476	15.1	476	84	2	8966	36	14	18	30	1.90
28967--31693	159	17.2	155	66	11	616	36	14	17	30	1.90
28917--31834	475	6.1	475	84	3	3611	36	14	17	31	1.90
33678--34899	476	2.6	476	82	4	1482	37	13	18	30	1.89
34332--34645	160	2.0	160	78	7	334	37	15	17	29	1.91
34515--36351	478	4.0	446	78	10	1766	37	14	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33678--36563	920	3.1	917	82	6	3543	37	13	18	30	1.90
34959--36564	478	3.4	476	84	2	2087	37	14	18	30	1.90
39687--39711	13	1.9	13	100	0	50	36	16	16	32	1.90
39752--39818	33	2.0	33	88	0	98	40	14	11	32	1.83
39774--39798	13	1.9	13	100	0	50	32	16	16	36	1.90
40388--42068	159	10.6	157	67	11	477	37	13	17	31	1.89
40122--42348	475	4.7	474	85	2	2975	37	14	17	31	1.90
41969--42744	395	2.0	396	87	1	1128	36	14	17	31	1.90
42364--45449	476	6.5	475	85	2	4015	37	13	18	30	1.90
42364--45449	954	3.2	947	85	3	4071	37	13	18	30	1.90
46058--47228	395	3.0	395	94	0	1950	36	14	18	31	1.90
46453--49454	870	3.5	871	95	0	5273	36	14	18	30	1.91
47323--48098	395	2.0	395	89	1	1180	36	14	18	31	1.90
47728--48378	159	4.1	159	68	11	418	36	13	19	29	1.91
48587--53767	477	10.9	475	84	4	6044	36	14	18	30	1.91
53413--54080	313	2.1	316	85	4	904	34	15	18	31	1.92
52947--54527	790	2.0	782	85	4	2110	34	14	19	31	1.92
53731--55504	477	3.7	474	86	3	2391	34	14	19	30	1.92
53731--55478	951	1.8	948	86	4	2545	34	14	19	30	1.92
55155--55817	313	2.1	313	85	3	877	35	16	17	30	1.92
54680--56295	790	2.0	791	85	3	2142	35	15	19	30	1.92
55472--59826	477	9.1	476	85	4	5449	35	14	19	30	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62414--62441	12	2.3	12	100	0	56	42	21	0	35	1.53
67409--67443	3	11.7	3	87	0	52	28	31	0	40	1.57
67407--67445	9	4.3	9	81	12	53	25	30	0	43	1.55
69014--69066	20	2.7	20	87	0	70	30	20	13	35	1.91
69096--69185	20	4.7	20	77	15	84	40	12	16	31	1.85
70299--71468	159	7.4	159	69	12	449	37	15	17	30	1.90
70079--71633	475	3.3	474	91	1	2341	37	14	17	30	1.90
70113--71286	159	7.4	158	69	11	527	37	14	17	30	1.90
70079--71589	158	9.5	157	68	11	724	37	14	17	30	1.90
73260--73331	12	6.5	11	80	16	71	40	0	45	13	1.44
73280--73311	9	3.6	9	91	0	55	43	0	43	12	1.42
73250--73331	42	2.0	42	95	0	146	43	0	43	12	1.41
73289--73359	33	2.2	33	89	0	106	42	1	45	11	1.48
73307--73360	15	3.4	15	76	14	54	40	1	48	9	1.46
73283--73365	18	4.8	18	75	11	66	43	1	44	10	1.47
78337--86705	476	17.6	476	85	2	10433	37	14	18	30	1.90
78556--85892	159	46.3	160	65	13	859	37	14	18	30	1.90
86710--89629	476	6.1	475	83	3	3652	36	13	18	31	1.90
86710--89640	952	3.1	943	85	3	4088	36	14	18	31	1.90
86760--89362	159	16.4	157	65	13	504	36	13	18	31	1.90
89250--90025	395	2.0	396	86	1	1110	37	13	18	30	1.90
89644--91453	476	3.8	475	84	2	2294	37	13	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91073--91848	395	2.0	395	87	1	1126	35	14	18	31	1.91
91468--92070	159	3.8	157	69	9	364	36	14	19	29	1.91
91943--92718	395	2.0	395	88	1	1171	35	14	18	31	1.91
92387--93051	158	4.2	158	70	9	424	36	15	18	29	1.91
90600--95253	870	5.3	870	97	0	8695	36	14	18	30	1.91
92812--93587	395	2.0	395	89	1	1187	35	14	18	31	1.91
93217--93867	159	4.1	159	69	10	416	36	14	19	29	1.91
94087--94739	159	4.1	158	69	11	400	37	14	18	29	1.91

Tables:   1

The End!