genome.fa.s1226.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1226
Parameters: 2 7 7 80 10 50 1000
Length:  86302

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13590--13664	7	10.6	7	77	17	59	85	5	9	0	0.74
13589--13648	13	4.8	12	84	10	75	86	8	5	0	0.69
13590--13665	15	5.3	14	78	10	82	85	5	9	0	0.73
13589--13664	38	2.0	38	84	5	100	84	6	9	0	0.78
13590--13648	1	59.0	1	77	0	55	88	6	5	0	0.64
14630--15307	55	12.3	55	89	4	971	28	29	20	21	1.98
15831--15857	14	1.9	14	100	0	54	77	0	7	14	0.97
15862--15918	21	2.7	21	97	0	105	33	10	19	36	1.86
16049--16074	13	2.0	13	100	0	52	30	15	15	38	1.88
16029--16095	33	2.0	33	88	0	98	25	14	16	43	1.86
18544--18619	27	2.8	28	89	2	109	23	34	21	21	1.97
18433--18771	52	6.4	51	69	15	206	30	26	12	30	1.93
18755--18831	28	2.8	28	85	0	91	23	32	19	24	1.97
18431--18831	212	1.9	212	89	4	628	28	27	13	30	1.94
18706--18912	106	1.9	107	80	3	238	26	29	14	28	1.96
26448--26650	79	2.6	79	82	3	221	30	16	28	25	1.96
26602--26673	28	2.6	28	88	0	99	23	19	34	22	1.96
26662--26831	52	3.3	53	77	9	145	33	12	24	29	1.92
26634--26973	185	1.8	185	87	5	510	33	12	24	29	1.92
26850--26968	51	2.3	53	84	7	145	34	11	21	31	1.90
26714--26964	133	1.9	132	80	8	296	34	13	23	28	1.93
29333--29358	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29312--29378	33	2.0	33	88	0	98	43	16	14	25	1.86
29398--29465	19	3.9	18	76	23	83	38	14	11	35	1.83
29420--29444	13	1.9	13	100	0	50	32	16	16	36	1.90
29401--29463	32	2.0	32	96	0	117	36	15	12	34	1.86
30376--30406	13	2.4	13	94	0	53	35	16	9	38	1.81
30446--30492	19	2.4	20	92	3	78	42	10	14	31	1.80
32658--32732	19	3.9	19	89	1	105	32	18	12	37	1.88
34373--34436	19	3.7	19	74	23	77	32	10	18	37	1.86
34374--34439	32	2.1	32	97	0	123	33	10	19	36	1.86
34393--34417	13	1.9	13	100	0	50	36	16	16	32	1.90
34457--34607	52	2.9	52	94	1	257	35	17	17	29	1.93
38672--38985	168	1.9	168	91	1	513	28	18	12	40	1.87
43849--43881	17	1.9	17	100	0	66	30	36	0	33	1.58
50642--50682	21	2.0	21	85	9	57	39	12	9	39	1.76
50763--50898	53	2.5	53	95	1	236	37	19	16	26	1.93
50922--50975	20	2.6	21	80	11	67	25	27	5	40	1.78
51523--51589	37	1.9	35	88	11	102	32	11	25	29	1.92
52941--52965	13	1.9	13	100	0	50	32	16	16	36	1.90
54569--54599	16	1.9	16	93	0	53	35	9	0	54	1.33
59236--59288	19	2.7	20	91	8	83	39	11	18	30	1.86
62001--62040	20	2.0	20	90	4	64	50	10	10	30	1.69
62292--62322	10	3.0	10	90	9	53	48	3	9	38	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62292--62331	21	1.9	21	89	0	62	50	5	10	35	1.58
64753--65130	81	4.7	79	78	5	301	44	12	21	21	1.85
64799--65101	160	1.9	160	80	2	358	44	11	22	21	1.83
65140--65319	78	2.3	79	79	8	181	40	12	23	23	1.89
65170--65310	39	3.6	39	79	8	162	39	14	23	23	1.91
65170--65320	78	1.9	77	82	6	189	39	14	23	22	1.91
68584--68692	49	2.2	49	100	0	218	44	12	13	29	1.81
69017--69147	41	3.2	40	77	6	122	41	16	21	20	1.89
69125--69644	66	8.0	65	73	7	259	46	15	22	15	1.84
71409--71462	20	2.7	20	91	5	83	37	18	12	31	1.89
72162--72448	142	2.0	139	84	9	348	25	16	8	49	1.74
72419--72468	22	2.3	22	86	3	66	4	20	6	70	1.25
72711--72761	13	4.2	12	76	11	50	3	17	1	76	1.03
72728--72783	23	2.4	24	82	8	62	7	19	0	73	1.06
74585--74609	13	1.9	13	100	0	50	32	16	16	36	1.90
83791--83853	19	3.7	18	72	24	64	33	12	20	33	1.90
83791--83861	32	2.2	32	94	0	124	32	12	21	33	1.91
83883--83977	20	4.8	20	100	0	190	35	18	10	34	1.86

Tables:   1

The End!