genome.fa.s1243.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1243
Parameters: 2 7 7 80 10 50 1000
Length:  213413

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142533--142585	20	2.7	20	100	0	106	33	20	15	30	1.93
148145--148341	73	2.7	73	81	6	206	53	11	1	34	1.43
149620--149654	11	3.0	12	83	8	54	65	8	14	11	1.46
151090--151121	16	1.9	17	93	6	57	65	0	3	31	1.08
153646--153712	33	2.0	33	88	0	98	47	13	11	26	1.77
153676--153731	20	2.8	20	94	0	94	48	16	12	23	1.80
163427--163551	52	2.4	52	91	0	196	28	18	16	36	1.93
163427--163571	52	2.8	52	86	4	177	31	17	16	34	1.93
163557--163584	13	2.2	13	100	0	56	39	17	14	28	1.89
163625--163691	33	2.0	33	88	0	98	40	14	11	32	1.83
163647--163671	13	1.9	13	100	0	50	32	16	16	36	1.90
165060--165301	70	3.4	70	93	0	403	30	17	10	42	1.82
165048--165301	141	1.8	140	91	0	418	29	17	10	42	1.83
165229--165579	92	3.9	89	84	5	424	35	17	6	40	1.76
165413--165579	90	1.9	91	92	0	243	35	16	6	41	1.74
165523--165636	57	2.0	57	91	0	183	34	16	8	40	1.80
165432--165731	147	2.0	147	87	4	431	34	17	7	41	1.77
165577--165750	95	1.8	95	91	0	285	32	16	6	44	1.74
170517--170542	13	2.0	13	100	0	52	30	15	15	38	1.88
170501--170567	33	2.0	33	85	5	91	31	11	19	37	1.88
177028--177151	52	2.4	51	93	4	205	29	17	18	34	1.94
177028--177171	52	2.8	50	84	13	177	30	17	18	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
177160--177184	13	1.9	13	100	0	50	36	16	16	32	1.90
177561--177585	13	1.9	13	100	0	50	36	16	16	32	1.90
177653--177677	13	1.9	13	100	0	50	32	16	16	36	1.90
177686--177806	52	2.3	52	98	0	233	34	17	18	29	1.94
181209--181391	79	2.3	79	83	3	251	32	14	25	27	1.95
181201--181429	79	2.9	77	82	2	242	30	15	26	27	1.96
181361--181479	51	2.3	51	85	2	150	28	15	27	28	1.96
181463--181539	28	2.8	27	90	7	111	27	19	29	23	1.98
181333--181665	158	2.1	157	81	3	375	31	15	26	26	1.96
181579--181774	79	2.5	78	78	4	189	35	13	22	28	1.92
184689--184926	45	5.4	44	79	11	220	41	13	25	20	1.88
184734--184901	89	1.9	89	86	6	241	42	10	27	19	1.83
184902--185412	62	8.5	60	82	6	597	27	18	27	26	1.99
185325--185507	100	1.8	101	92	1	314	27	18	27	26	1.98
185426--185731	61	5.0	61	89	1	416	27	18	28	25	1.98
191868--192197	79	4.2	75	80	8	320	32	15	25	26	1.95
191860--192197	158	2.1	158	85	2	439	32	15	25	26	1.95
192150--192216	27	2.4	28	85	14	95	25	17	34	22	1.96
192074--192270	106	1.9	106	81	4	245	30	14	26	27	1.95
192260--192481	79	2.8	78	76	8	234	31	13	26	29	1.94
194570--194624	20	2.8	20	88	5	76	45	14	12	27	1.81
195223--195327	41	2.6	41	80	7	124	40	12	27	19	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
195332--195474	42	3.3	44	83	10	170	41	15	23	19	1.89
197768--197834	33	2.0	33	88	0	98	34	11	13	40	1.81
197788--197812	13	1.9	13	100	0	50	36	16	16	32	1.90
197875--197899	13	1.9	13	100	0	50	32	16	16	36	1.90
197908--198031	52	2.4	52	94	1	214	35	18	17	28	1.94
202158--202184	10	2.7	10	100	0	54	0	0	22	77	0.76
208448--208482	12	2.9	12	100	0	70	40	8	25	25	1.84
211865--211989	1	125.0	1	76	0	106	87	10	1	0	0.66

Tables:   1   2

The End!