Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1247
Parameters: 2 7 7 80 10 50 1000
Length:  49520

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3347--3422
30
2.6
30
89
6
111
7
44
3
43
1.51
3338--3422
30
3.0
29
81
10
86
7
45
3
43
1.48
5066--6524
475
3.1
474
91
1
2239
37
13
18
31
1.89
5066--6293
159
7.7
158
68
11
598
36
13
18
31
1.89
9389--10639
475
2.6
471
83
4
1563
31
17
13
36
1.89
11432--13541
475
4.4
477
83
3
2533
31
18
14
35
1.90
13123--13965
423
2.0
424
87
2
1201
32
18
13
34
1.90
9886--15356
949
5.9
899
78
9
4096
31
18
14
35
1.90
13538--15804
476
4.8
476
81
2
2599
31
18
14
35
1.90
21734--21794
9
7.1
9
72
10
56
11
44
1
42
1.50
21739--21773
12
2.9
12
84
16
54
11
48
0
40
1.39
21706--21812
42
2.5
42
92
0
178
10
47
1
40
1.48
21706--21824
42
2.8
40
81
9
139
10
45
1
42
1.49
23559--25195
158
10.3
158
65
13
574
31
18
13
36
1.90
23428--25771
476
4.9
476
91
1
3529
31
18
14
36
1.90
23428--25771
953
2.5
952
90
1
3551
31
18
14
36
1.90
26529--34039
475
15.8
476
82
3
8507
31
18
14
35
1.91
29217--33698
158
28.3
158
65
14
940
31
18
14
35
1.91
35023--41486
475
13.7
476
81
4
6776
31
18
14
35
1.91
41451--47403
475
12.5
473
83
4
6247
31
18
13
35
1.90
43484--44649
158
7.4
158
67
15
519
31
17
14
36
1.90
48878--49299
214
2.0
214
84
5
557
31
20
13
33
1.92

Tables:   1

The End!