genome.fa.s1248.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1248
Parameters: 2 7 7 80 10 50 1000
Length:  76318

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3--8096	476	17.0	476	88	2	11289	31	18	14	35	1.91
8476--8781	153	2.0	153	98	0	585	38	24	10	26	1.88
13224--13273	18	2.7	19	79	11	52	8	44	2	46	1.44
13258--13318	9	7.1	9	70	10	56	14	42	0	42	1.46
13263--13339	12	6.9	12	72	24	62	14	45	0	40	1.45
13230--13348	42	2.8	42	89	0	175	11	43	0	43	1.46
14956--30869	476	33.5	476	84	4	12058	31	18	14	35	1.91
14956--32175	952	18.2	952	83	5	13586	31	18	14	35	1.91
23074--23712	318	2.0	310	87	3	920	30	18	14	36	1.91
27849--28157	161	1.9	161	93	0	528	30	22	9	38	1.85
30874--32175	476	2.7	475	88	1	1898	32	17	14	35	1.90
31864--32492	317	2.0	313	88	2	929	33	18	16	31	1.93
31865--32563	317	2.2	313	84	3	877	33	17	15	32	1.92
32177--39814	476	16.1	476	88	1	10657	31	18	14	35	1.90
40655--40694	15	2.7	15	80	0	53	82	2	12	2	0.87
41441--41558	12	10.9	11	75	16	72	39	2	47	10	1.51
41461--41563	9	12.1	9	69	12	65	41	2	44	10	1.54
41464--41576	18	5.6	18	68	22	64	42	2	44	10	1.53
41431--41591	42	3.8	42	94	0	259	42	2	45	9	1.49
46569--50754	475	8.8	476	89	1	5892	31	18	14	35	1.91
51507--51532	13	2.0	13	100	0	52	30	15	15	38	1.88
51487--51550	32	2.0	33	90	3	103	28	14	18	39	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51487--51557	19	4.0	18	72	25	62	26	12	21	39	1.89
53583--53625	20	2.1	20	82	4	50	9	27	44	18	1.80
54067--54104	13	2.9	13	92	0	58	34	15	15	34	1.90
56188--56218	15	2.1	15	93	0	53	12	22	16	48	1.80
60277--60302	13	2.0	13	100	0	52	30	15	15	38	1.88
60257--60320	32	2.0	33	90	3	103	28	14	18	39	1.90
60257--60327	19	4.0	18	72	25	62	26	12	21	39	1.89
60360--60416	20	2.8	20	86	7	80	26	15	15	42	1.87
69443--70084	159	4.1	157	66	13	355	31	19	15	34	1.93
60686--73682	476	27.4	476	88	1	18121	31	18	14	35	1.91
73318--74071	390	1.9	389	91	0	1222	30	18	14	36	1.91
73700--76302	474	5.5	474	85	5	3395	31	18	14	36	1.90

Tables:   1

The End!