genome.fa.s1265.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1265
Parameters: 2 7 7 80 10 50 1000
Length:  436287

Tables:   1   2   3   

This is table  3  of  3  ( 319 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345642--345723	14	5.6	14	83	11	103	82	17	0	0	0.66
345653--345723	24	3.1	24	82	8	94	83	16	0	0	0.66
345640--345723	44	1.9	45	90	4	136	83	16	0	0	0.65
345639--345712	10	7.3	10	82	11	80	83	16	0	0	0.64
345637--345720	6	13.8	6	71	22	52	83	16	0	0	0.65
345641--345723	43	1.9	42	90	7	130	83	16	0	0	0.65
346960--347137	32	5.7	30	89	7	218	25	30	18	25	1.98
346960--347155	94	2.1	91	85	6	259	25	30	17	27	1.97
347190--347359	27	5.9	27	75	15	160	21	36	13	28	1.92
347148--347562	34	12.8	33	80	13	411	20	35	12	31	1.90
347186--347562	60	5.9	60	89	8	450	20	35	12	31	1.90
347564--347733	32	5.2	33	87	4	249	29	35	17	17	1.93
347733--348621	49	18.7	49	83	7	1124	25	25	18	30	1.98
347779--348630	92	9.0	92	90	5	1213	24	26	18	30	1.98
347919--347986	22	3.1	22	62	26	54	23	25	20	30	1.98
348238--348668	49	8.6	53	80	8	174	24	25	17	32	1.97
349561--349585	13	1.9	13	100	0	50	36	16	16	32	1.90
349541--349610	33	2.1	33	89	0	104	34	11	14	40	1.82
349651--349675	13	1.9	13	100	0	50	32	16	16	36	1.90
349684--349804	52	2.3	52	97	0	224	34	18	18	28	1.94
352892--353140	28	8.9	28	81	9	269	31	15	29	23	1.95
352892--353140	55	4.5	55	90	2	354	31	15	29	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
352892--353140	83	3.0	82	85	5	311	31	15	29	23	1.95
354160--354192	11	3.0	11	87	12	50	0	3	6	90	0.52
354462--354515	14	4.3	13	71	23	53	5	14	12	66	1.41
361445--361494	20	2.5	20	100	0	100	34	14	12	40	1.82
365436--365477	19	2.3	18	88	8	59	71	7	2	19	1.20
369297--369330	14	2.3	15	90	5	52	47	2	0	50	1.16
369309--369453	67	2.2	67	77	5	150	44	6	4	43	1.52
370707--370752	23	2.0	25	87	12	71	58	10	2	28	1.43
372129--372174	19	2.5	20	82	13	62	39	0	0	60	0.97
372187--372226	18	2.3	17	83	8	53	62	2	2	32	1.22
372594--372639	21	2.2	20	88	11	67	73	0	0	26	0.83
372586--372651	17	3.8	17	78	13	64	69	0	0	30	0.88
372591--372660	29	2.3	30	87	4	97	68	0	0	31	0.90
372586--372662	30	2.4	32	81	14	97	67	0	0	32	0.91
372689--372751	30	2.1	29	83	13	76	63	1	0	34	1.04
372887--372930	2	22.5	2	95	4	81	52	0	0	47	1.00
373678--373705	2	14.0	2	100	0	56	50	0	0	50	1.00
374075--374104	15	1.9	16	93	6	53	33	6	6	53	1.53
377845--377883	2	19.5	2	100	0	78	48	0	51	0	1.00
379554--379600	3	15.7	3	90	0	76	63	4	0	31	1.13
379735--379770	2	18.0	2	100	0	72	50	0	0	50	1.00
380195--380239	23	2.0	23	86	0	63	2	13	0	84	0.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380712--380738	13	2.1	13	100	0	54	62	0	14	22	1.31
382078--382106	2	14.5	2	100	0	58	0	48	0	51	1.00
382757--382792	2	18.5	2	94	5	65	50	0	0	50	1.00
383088--383116	2	15.0	2	92	7	51	51	0	0	48	1.00
383441--383497	15	4.1	15	72	20	52	68	1	0	29	1.00
383450--383522	23	3.2	22	72	14	58	65	1	0	32	1.01
387260--387289	14	2.2	14	94	5	53	36	0	3	60	1.14
387691--387725	2	17.5	2	87	0	52	42	0	5	51	1.25
388955--389006	19	2.7	19	82	5	61	55	1	3	38	1.29
390531--390563	15	2.1	16	88	5	50	75	9	3	12	1.14
395069--395100	2	16.0	2	100	0	64	50	0	50	0	1.00
403719--403748	14	2.2	14	94	5	53	60	0	0	40	0.97
403984--404056	34	2.1	35	92	2	121	43	24	6	24	1.78
410093--410134	21	1.9	23	85	9	61	42	4	0	52	1.22
410677--410736	30	2.1	28	87	6	84	55	1	0	43	1.10
420655--420694	20	2.1	20	86	9	57	20	0	2	77	0.88
420765--420802	16	2.4	16	95	0	67	52	2	5	39	1.38
424934--424984	21	2.4	21	84	9	68	60	1	1	35	1.19
425681--425722	19	2.2	19	86	0	57	45	2	2	50	1.27
426149--426232	26	3.2	26	63	24	68	46	2	13	38	1.56
426135--426241	52	2.1	52	100	0	214	43	4	14	36	1.67
427347--427406	20	2.7	22	71	23	63	53	1	0	45	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428926--428961	3	12.0	3	100	0	72	66	0	0	33	0.92
430554--430581	2	14.0	2	100	0	56	50	50	0	0	1.00
431120--431175	29	1.9	29	82	7	69	62	1	0	35	1.06
431175--431253	30	2.6	31	76	9	74	51	6	0	41	1.27
434107--434175	4	16.5	4	71	14	50	30	1	1	66	1.09
434331--434393	24	2.7	23	72	27	60	49	4	14	31	1.64
434675--434737	8	8.2	8	77	19	55	36	1	1	60	1.16
434723--434767	18	2.6	18	82	13	58	46	0	0	53	1.00
435032--435170	65	2.1	64	82	10	167	56	1	0	42	1.08
435086--435361	110	2.5	111	84	7	335	53	2	2	42	1.26
435332--435387	23	2.4	23	80	11	62	62	5	1	30	1.28
435680--436017	117	2.9	117	82	12	385	42	2	1	53	1.22
435835--436052	111	2.1	101	82	11	235	41	2	1	53	1.26

Tables:   1   2   3

The End!