genome.fa.s1293.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1293
Parameters: 2 7 7 80 10 50 1000
Length:  240166

Tables:   1   2   

This is table  2  of  2  ( 144 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211596--211650	21	2.6	21	85	0	65	18	21	0	60	1.37
211611--211654	21	2.1	21	91	0	70	20	18	0	61	1.35
213206--213291	35	2.6	33	78	12	104	32	23	15	29	1.95
213774--213819	24	1.9	24	86	0	65	50	8	17	23	1.74
213752--213882	32	4.0	32	83	3	154	41	9	22	25	1.83
216920--216983	32	2.0	33	87	9	96	28	15	17	39	1.90
219059--219113	20	2.8	20	88	0	83	9	25	43	21	1.82
225719--225744	13	2.0	13	100	0	52	30	15	15	38	1.88
225699--225762	32	2.0	33	90	9	105	29	15	15	39	1.89
227683--228550	137	6.2	140	74	10	419	25	23	15	36	1.94
227680--228496	70	11.8	70	73	11	551	24	23	15	36	1.93
227967--228427	64	6.9	64	75	11	266	24	23	16	35	1.95
227896--228419	199	2.6	201	81	6	610	24	24	16	34	1.95
229082--229196	50	2.3	50	87	3	158	28	14	13	43	1.83
231394--231583	95	2.0	96	89	2	294	37	18	8	34	1.83
231602--231961	79	4.5	80	78	3	327	29	23	10	37	1.87
231592--231961	159	2.3	156	80	5	391	29	24	9	36	1.87
231903--232022	53	2.3	53	82	7	138	28	21	10	39	1.87
231824--232175	133	2.7	130	80	9	367	30	22	10	36	1.88
233266--233292	13	2.1	13	100	0	54	29	14	14	40	1.86
233278--233333	19	2.9	19	89	5	85	33	12	17	35	1.88
233278--233332	20	2.8	20	91	2	85	32	12	18	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233385--233416	13	2.5	13	94	0	55	37	15	12	34	1.85
239736--239782	22	2.2	20	82	14	51	31	19	0	48	1.49

Tables:   1   2

The End!