Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1300
Parameters: 2 7 7 80 10 50 1000
Length:  21764

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4554--4597
20
2.0
22
83
12
56
54
2
0
43
1.12
4724--4897
64
2.7
66
90
5
275
26
21
17
34
1.96
7342--7375
2
17.0
2
100
0
68
50
0
0
50
1.00
8620--8665
15
2.9
16
83
6
67
21
4
21
52
1.64
15184--15213
16
1.9
15
93
6
51
56
0
0
43
0.99
15420--15465
19
2.5
19
89
3
67
56
2
4
36
1.31
15570--15654
37
2.3
38
84
8
104
40
3
2
54
1.31
15580--15674
31
2.8
32
71
21
86
42
3
2
52
1.29
15672--15763
31
3.0
31
80
6
116
35
5
15
43
1.69
15628--15763
55
2.4
57
81
10
145
38
5
11
45
1.62
15674--15759
29
2.9
30
82
3
102
33
5
16
44
1.71
16069--16109
19
2.2
18
86
4
55
41
4
0
53
1.22
16127--16203
41
1.9
40
86
5
111
57
2
1
38
1.21
16343--16386
13
3.2
13
82
17
61
38
0
0
61
0.96
16329--16412
29
2.8
29
81
3
105
48
2
1
47
1.22
16845--16871
1
27.0
1
100
0
54
0
0
0
100
0.00
17653--17708
23
2.5
22
79
2
67
50
0
0
50
1.00
18450--18502
18
3.2
16
73
26
56
54
1
0
43
1.11
19365--19411
14
3.2
14
80
16
51
40
0
0
59
0.97
19367--19412
17
2.3
21
79
20
55
41
0
0
58
0.98
19405--19455
25
2.1
24
82
10
59
45
3
0
50
1.20
19687--19769
42
2.0
42
92
0
139
42
19
2
36
1.64
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
19910--19957
22
2.2
22
81
7
53
56
0
0
43
0.99
19916--19965
21
2.3
21
80
13
57
56
0
0
44
0.99
19917--19963
22
2.2
21
85
11
60
55
0
0
44
0.99
19916--19970
22
2.5
21
77
16
58
56
0
0
43
0.99
20904--20943
2
20.0
2
100
0
80
50
0
0
50
1.00
21558--21600
20
2.2
19
84
12
52
39
16
6
37
1.75

Tables:   1

The End!