genome.fa.s1309.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1309
Parameters: 2 7 7 80 10 50 1000
Length:  46475

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912--3252	805	2.9	806	93	1	3862	21	37	28	12	1.89
912--3252	402	5.8	402	94	1	3824	21	37	28	12	1.89
4262--4450	103	1.9	101	89	2	297	4	42	41	10	1.60
4611--4732	64	1.9	64	91	0	199	13	22	45	18	1.83
5071--5257	102	1.8	102	91	4	315	8	40	40	10	1.69
5168--5343	64	2.8	62	77	16	168	7	38	44	8	1.64
3600--5507	819	2.3	811	83	7	2339	13	34	39	12	1.83
13089--13889	418	1.9	404	85	5	1081	21	36	29	13	1.91
14603--15319	358	2.0	358	100	0	1434	21	35	30	13	1.91
14961--16240	401	3.2	403	92	2	2045	21	37	29	12	1.90
25285--25473	103	1.9	101	89	2	297	4	42	41	10	1.60
25634--25755	64	1.9	64	91	0	199	13	22	45	18	1.83
26094--26280	102	1.8	102	91	4	315	8	40	40	10	1.69
26191--26366	64	2.8	62	77	16	168	7	38	44	8	1.64
24623--26530	819	2.3	811	83	7	2339	13	34	39	12	1.83
40931--41133	62	3.2	60	75	19	182	8	44	37	8	1.66
41044--41230	102	1.8	102	91	4	315	10	40	40	8	1.69
41569--41690	64	1.9	64	91	0	199	18	45	22	13	1.83
41750--41944	63	3.1	62	72	11	200	9	45	40	4	1.56
41851--42039	103	1.9	101	89	2	297	10	41	42	4	1.60
43047--43927	403	2.2	404	87	3	1290	12	29	37	21	1.90
43567--44283	358	2.0	358	98	0	1389	13	30	35	21	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43174--44581	761	1.8	764	91	2	2328	12	29	36	22	1.90

Tables:   1

The End!