genome.fa.s1311.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1311
Parameters: 2 7 7 80 10 50 1000
Length:  43312

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4332--9688	947	5.7	946	84	4	6618	36	12	19	31	1.90
4332--9688	475	11.3	474	84	3	6520	36	12	19	31	1.90
4362--9264	158	31.0	154	64	16	463	36	12	19	31	1.90
12974--13035	22	2.9	22	81	9	67	40	4	27	27	1.76
12944--13235	72	4.1	72	84	9	427	37	8	25	29	1.85
12905--13198	141	2.1	141	100	0	588	38	8	23	29	1.84
13115--13176	22	2.9	22	81	9	67	40	4	27	27	1.76
13191--13260	20	3.4	21	81	11	83	42	2	30	24	1.69
13780--13806	13	2.1	13	100	0	54	29	14	14	40	1.86
13790--13846	19	2.9	19	81	2	78	35	14	17	33	1.90
16729--17102	165	2.3	162	81	6	414	49	9	10	30	1.68
16795--17234	165	2.7	164	79	4	438	50	7	11	30	1.67
21697--21750	19	2.9	17	75	20	54	42	14	14	27	1.85
21852--21896	20	2.2	21	88	4	65	42	20	8	28	1.82
26330--26494	51	3.2	51	85	3	215	29	12	28	29	1.93
26477--26550	28	2.6	29	79	12	91	24	22	31	21	1.99
26430--26670	107	2.3	107	83	2	306	32	16	25	26	1.96
26587--26657	28	2.5	28	88	0	97	30	21	25	22	1.98
27749--27796	20	2.4	20	92	0	78	37	20	18	22	1.94
28974--29028	20	2.8	20	85	0	74	45	10	10	32	1.74
29043--29071	12	2.3	13	94	5	51	41	10	17	31	1.83
29054--29109	20	2.8	20	89	2	87	44	12	16	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29299--29325	13	2.1	13	100	0	54	29	44	18	7	1.77
29734--29840	53	2.0	53	96	0	196	39	24	13	23	1.90
29927--29972	24	2.0	23	83	12	58	73	0	23	2	0.94
29925--29998	31	2.3	32	83	4	87	71	1	20	6	1.16
30403--30464	31	2.0	31	100	0	124	22	16	22	38	1.92
34776--34802	13	2.1	13	100	0	54	29	14	14	40	1.86
34757--34821	33	2.0	32	87	3	94	30	15	13	40	1.86
34786--34862	20	3.9	20	87	1	111	35	15	16	32	1.91
34907--34937	13	2.4	13	94	0	53	35	16	12	35	1.87
34891--34959	33	2.1	33	83	5	86	36	10	18	34	1.85
39846--43312	941	3.7	940	80	8	3738	35	12	20	31	1.90
39846--43312	474	7.3	474	80	6	3793	35	12	20	31	1.90

Tables:   1

The End!