Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1340
Parameters: 2 7 7 80 10 50 1000
Length:  186353

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
153926--154006
39
2.1
38
93
2
135
20
16
22
40
1.91
153967--154082
47
2.5
47
87
2
153
20
21
18
39
1.92
153881--154050
86
2.0
83
81
10
193
22
19
18
39
1.93
153967--154123
47
3.3
46
81
6
145
21
21
16
40
1.91
154093--154293
35
5.6
36
80
2
174
25
20
6
46
1.75
154091--154301
70
3.0
69
79
6
226
25
20
6
46
1.75
154646--154713
33
2.1
32
86
2
91
35
16
14
33
1.89
161349--161393
20
2.1
22
84
8
58
20
48
26
4
1.68
163331--163387
20
2.8
20
83
0
69
38
14
15
31
1.87
164250--164448
35
5.7
35
86
3
215
22
22
11
43
1.85
164250--164448
105
1.9
105
82
6
251
22
22
11
43
1.85
164684--165170
85
5.7
84
76
6
347
20
21
12
46
1.83
164685--164827
43
3.3
43
69
5
119
20
20
9
48
1.76
164938--165090
43
3.6
41
74
7
128
18
17
11
51
1.75
164695--165155
255
1.8
255
79
6
549
20
21
12
45
1.83
165186--165339
66
2.3
65
81
6
168
16
22
16
43
1.87
169956--170344
168
2.3
165
83
4
471
35
10
4
49
1.59
171212--171237
13
2.0
13
100
0
52
30
15
15
38
1.88
171936--171979
21
2.1
21
83
8
54
25
31
4
38
1.76
173784--173809
13
2.0
13
100
0
52
38
15
15
30
1.88
175881--175911
15
2.1
15
93
0
53
12
22
16
48
1.80
178381--178406
13
2.0
13
100
0
52
30
15
15
38
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
180784--180830
21
2.3
21
76
23
55
42
4
19
34
1.70
180951--180986
11
3.0
12
84
15
56
36
16
16
30
1.91
180951--180987
13
3.0
13
88
11
60
37
16
16
29
1.90
180973--181051
20
3.7
20
78
15
77
44
13
15
26
1.84
183062--183092
15
2.1
15
93
0
53
12
22
16
48
1.80
184896--184940
21
2.1
21
84
8
56
22
20
4
53
1.63

Tables:   1   2

The End!