genome.fa.s1347.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1347
Parameters: 2 7 7 80 10 50 1000
Length:  26349

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4800--5405	159	3.8	158	70	8	376	37	14	18	29	1.91
7011--7786	395	2.0	395	88	1	1171	36	14	18	30	1.91
7882--8657	395	2.0	395	88	1	1171	36	14	18	30	1.91
8287--8937	159	4.1	158	70	10	414	37	14	19	29	1.91
1654--26349	870	28.4	870	98	0	47738	36	14	18	29	1.91
8752--9527	395	2.0	395	89	1	1180	36	14	18	30	1.91
9157--9807	159	4.1	159	70	10	416	37	14	18	29	1.91
9622--10397	395	2.0	395	88	1	1171	36	14	18	30	1.90
10017--10619	159	3.8	158	70	8	386	37	14	19	29	1.91
10492--11267	395	2.0	395	88	1	1171	36	14	18	30	1.91
10887--11489	159	3.8	158	70	9	379	37	14	18	29	1.91
11362--12137	395	2.0	395	89	1	1180	36	14	18	30	1.91
11767--12417	159	4.1	159	70	10	416	37	14	18	29	1.91
12232--13007	395	2.0	395	89	1	1180	36	14	18	30	1.91
12627--13229	159	3.8	158	70	8	386	36	14	19	29	1.91
13102--13877	395	2.0	395	89	1	1180	36	14	18	30	1.91
13507--14157	159	4.1	159	70	10	416	37	14	18	29	1.91
13972--14747	395	2.0	395	88	1	1171	36	14	18	30	1.90
14377--15027	159	4.1	159	70	10	416	37	14	18	29	1.91
14842--15617	395	2.0	395	88	1	1171	36	14	18	30	1.90
15247--15897	159	4.1	159	70	10	416	37	14	18	29	1.91
15712--16487	395	2.0	395	88	1	1171	36	14	18	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16107--16709	159	3.8	158	70	8	386	37	14	19	29	1.91
16582--17357	395	2.0	395	89	1	1189	36	14	18	30	1.91
16987--17637	159	4.1	159	70	10	416	37	14	18	29	1.91
16977--17844	475	1.8	473	88	1	1256	36	14	18	29	1.91
17857--18506	159	4.1	159	70	10	416	37	14	18	29	1.91
18321--19096	395	2.0	395	88	1	1162	36	14	18	31	1.91
18726--19376	159	4.1	159	70	10	416	37	14	18	29	1.91
19191--19966	395	2.0	395	88	1	1171	36	14	18	30	1.90
19596--20246	159	4.1	159	70	10	425	37	14	18	29	1.91
20061--20836	395	2.0	395	89	1	1189	36	14	18	31	1.90
20466--21116	159	4.1	159	70	10	416	36	14	18	29	1.91
20931--21706	395	2.0	395	88	1	1171	36	14	18	30	1.90
21336--21986	159	4.1	159	70	10	425	37	14	18	29	1.91
21326--22193	475	1.8	473	88	1	1265	36	14	18	29	1.91
22206--22853	159	4.1	159	69	11	407	37	14	18	29	1.91
22668--23443	395	2.0	395	89	1	1180	36	14	18	31	1.91
23073--23723	159	4.1	159	69	10	416	37	14	18	29	1.91
23063--23929	475	1.8	475	88	1	1290	36	14	18	30	1.91
23943--24592	159	4.1	159	69	12	420	36	14	18	29	1.91

Tables:   1

The End!