genome.fa.s1349.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1349
Parameters: 2 7 7 80 10 50 1000
Length:  45066

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34167--34430	122	2.2	122	87	0	377	31	20	26	22	1.98
34772--35085	61	5.1	62	80	3	332	29	21	25	22	1.99
33638--35415	617	2.9	619	95	1	3073	29	19	22	28	1.98
35479--35581	41	2.5	40	83	13	122	45	11	26	16	1.81
35682--35781	42	2.4	42	78	11	107	43	16	23	18	1.88
35843--36058	61	3.5	62	83	2	276	30	20	25	23	1.99
36545--36660	45	2.7	45	80	11	127	43	12	27	17	1.84
36665--36885	61	3.6	62	85	2	304	29	20	25	24	1.99
37274--37376	41	2.5	40	83	13	122	45	11	26	16	1.81
37379--37615	43	5.4	44	71	13	159	41	13	24	19	1.88
37638--37853	61	3.5	62	83	2	276	30	19	26	23	1.98
38157--38472	61	5.2	62	78	6	279	29	21	25	23	1.99
38178--38470	122	2.4	123	81	4	360	31	21	25	22	1.98
38864--38963	41	2.4	41	80	12	100	44	11	27	18	1.83
38969--39222	42	5.8	43	71	14	155	42	12	25	18	1.87
39235--39447	61	3.5	62	85	2	288	30	19	25	23	1.98
39750--40063	61	5.1	61	80	1	333	29	21	26	23	1.99
40458--40562	41	2.6	40	84	13	126	46	11	25	16	1.80
40718--40811	45	2.1	45	86	4	127	43	12	27	15	1.84
40806--41041	61	3.9	62	84	2	289	31	19	25	22	1.98
41344--41657	61	5.1	62	80	3	332	29	21	25	22	1.99
41356--41619	122	2.2	122	86	0	368	31	20	25	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41962--42275	61	5.1	61	80	2	317	29	22	25	22	1.99
41974--42275	121	2.5	122	83	3	367	30	21	26	22	1.99
40808--43225	621	3.9	621	95	1	4207	29	19	22	28	1.98
42595--42892	122	2.5	120	81	6	366	28	21	26	23	1.99
42595--42900	61	5.0	61	79	4	314	28	21	26	23	1.99
43289--43388	41	2.4	41	85	9	125	46	12	24	18	1.82
43394--43632	42	5.5	43	72	12	157	41	13	24	20	1.89
43441--43646	45	4.7	44	70	13	133	41	13	27	17	1.87
43643--43871	61	3.8	61	84	2	282	30	20	25	23	1.98
44170--44482	61	5.1	61	81	2	344	29	21	25	23	1.99
44871--44973	41	2.5	41	83	10	122	48	11	23	16	1.79

Tables:   1   2

The End!