genome.fa.s1363.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1363
Parameters: 2 7 7 80 10 50 1000
Length:  114652

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3876--3924	14	3.4	14	77	5	53	63	4	0	32	1.13
3869--3922	15	3.7	15	77	5	56	62	3	0	33	1.12
5625--5671	2	23.5	2	100	0	94	48	0	0	51	1.00
10970--11002	15	2.1	16	88	5	50	54	0	0	45	0.99
10967--11009	21	2.0	21	82	8	52	55	0	0	44	0.99
11173--11217	23	2.1	22	84	15	60	48	2	4	44	1.35
11204--11261	20	2.8	22	82	12	61	27	1	0	70	0.97
11210--11266	27	2.1	27	87	12	82	26	1	0	71	0.95
11581--11613	17	2.0	17	88	5	50	51	0	0	48	1.00
11581--11647	16	4.1	16	79	14	57	55	0	0	44	0.99
14030--14082	23	2.5	22	81	9	56	24	1	1	71	1.06
14402--17716	983	3.4	975	88	4	4784	37	9	10	42	1.72
17826--17870	17	2.8	16	83	6	54	42	0	0	57	0.98
18101--18212	40	3.0	36	78	13	102	34	4	8	52	1.51
18142--18212	36	2.0	35	88	2	106	33	4	8	53	1.51
18106--18233	39	3.4	37	77	10	116	35	4	7	53	1.49
18362--18391	10	3.0	10	90	0	51	73	0	0	26	0.84
19264--19309	21	2.2	21	84	7	58	30	0	0	69	0.89
19412--19441	16	1.9	15	93	6	51	33	0	0	66	0.92
26229--26279	24	2.3	21	80	10	57	50	5	1	41	1.37
26230--26279	22	2.2	24	85	7	68	50	6	2	42	1.38
26418--26456	2	19.5	2	89	0	60	51	5	0	43	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26681--26797	58	2.0	58	96	0	216	40	11	7	40	1.71
28911--28936	13	2.0	13	100	0	52	30	15	15	38	1.88
28975--29050	21	3.7	21	80	3	100	30	17	10	42	1.82
28996--29068	20	3.6	20	81	3	92	32	19	12	35	1.89
28975--29068	41	2.3	41	96	0	170	30	18	11	39	1.86
29673--29718	16	2.8	16	93	6	74	30	39	2	28	1.69
31524--31562	13	3.0	13	96	0	69	35	15	17	30	1.91
31548--31626	20	3.7	20	70	20	70	45	16	12	25	1.82
33633--33670	15	2.5	15	91	0	58	13	21	15	50	1.78
37733--37758	13	2.0	13	100	0	52	30	15	15	38	1.88
37797--37872	21	3.7	21	80	3	100	30	17	10	42	1.82
37818--37890	20	3.6	20	81	3	92	32	19	12	35	1.89
37797--37890	41	2.3	41	96	0	170	30	18	11	39	1.86
38200--38576	32	11.8	32	92	0	596	17	18	33	31	1.94
38559--39705	27	42.0	27	92	2	1844	28	14	34	23	1.93
38559--39705	82	14.0	81	92	2	1844	28	14	34	23	1.93
46920--46969	23	2.3	23	82	6	59	54	6	2	38	1.37
47108--47140	14	2.4	14	100	0	66	51	6	0	42	1.26
51092--51145	12	4.3	13	83	11	51	83	9	1	5	0.88
51106--51158	11	4.7	11	80	13	54	81	15	0	3	0.83
51105--51157	12	4.6	11	81	6	61	83	15	0	1	0.74
51105--51157	23	2.3	23	83	0	70	83	15	0	1	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52367--52719	31	11.2	31	77	12	210	22	30	13	33	1.92
52380--52589	62	3.3	61	84	7	251	23	29	15	31	1.95
52444--52694	34	7.8	33	74	14	168	21	30	13	34	1.92
52380--52634	64	4.0	63	78	9	234	23	29	13	33	1.93
52444--52727	27	9.0	33	76	13	183	21	30	13	34	1.92
52787--53771	49	20.7	49	75	11	807	24	24	17	32	1.97
52887--52965	39	2.0	39	92	0	131	27	25	21	25	1.99
52789--53768	137	6.9	137	86	5	1174	24	24	17	32	1.97
52837--53475	88	7.0	89	70	16	316	24	25	18	31	1.98
53024--53102	39	2.0	39	90	0	122	29	25	20	25	1.99
53297--53375	39	2.0	39	90	0	122	29	25	20	25	1.99
53336--53771	101	4.3	101	88	0	595	24	24	16	34	1.95
57972--58017	11	4.6	10	77	17	51	56	0	0	43	0.99
57973--58017	20	2.2	20	84	0	63	57	0	0	42	0.98
60525--60558	7	4.9	7	96	0	59	32	0	0	67	0.91
60626--60666	18	2.3	18	87	8	57	36	0	0	63	0.95
60710--60749	16	2.5	16	87	0	53	45	0	2	52	1.14
61003--61104	40	2.7	37	82	8	132	33	4	9	51	1.56
62964--62992	12	2.4	12	100	0	58	24	17	34	24	1.96
62956--62993	18	2.2	17	90	4	58	23	18	31	26	1.97
73325--73385	19	3.5	19	70	25	71	31	18	14	36	1.91
77432--77550	20	5.7	20	77	9	121	32	15	13	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77425--77550	43	2.9	44	80	10	152	32	16	13	37	1.88
91280--91426	52	2.8	52	87	2	206	28	17	18	36	1.93
91414--91440	13	2.1	13	100	0	54	29	14	14	40	1.86
91447--91511	19	3.7	19	65	23	61	33	16	15	33	1.91
92265--93246	49	19.8	49	84	4	1116	32	17	25	23	1.97
92265--93246	101	9.9	98	86	5	1116	32	17	25	23	1.97
93324--93863	34	16.3	34	89	2	617	33	14	32	20	1.92
93580--93902	62	5.0	63	85	4	308	34	14	30	21	1.93
94899--94941	17	2.6	17	81	3	52	0	9	9	81	0.88
95177--95221	22	2.0	22	87	8	65	0	2	17	80	0.82
95176--95239	34	1.9	33	81	9	76	3	6	15	75	1.14
102087--102212	52	2.4	52	86	0	198	26	17	18	38	1.92
103904--103985	28	2.9	28	80	7	96	26	17	31	24	1.97
103968--104137	51	3.3	51	78	6	189	33	11	25	28	1.91
104120--104195	27	2.8	28	88	6	102	21	21	34	23	1.97
106629--106710	28	2.9	28	80	7	96	26	17	31	24	1.97
106693--106863	51	3.3	51	78	4	189	32	11	26	29	1.92
108393--113256	442	11.0	442	99	0	9565	36	17	23	22	1.95
108393--113256	885	5.5	884	99	0	9601	36	17	23	22	1.95
113796--114633	55	15.2	55	85	8	1064	20	19	30	28	1.97
113845--113987	26	5.3	26	64	21	78	19	19	32	27	1.96
114227--114317	27	3.3	27	66	13	78	20	17	32	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113819--114633	330	2.5	328	90	5	1220	20	20	31	28	1.97

Tables:   1

The End!