genome.fa.s1373.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1373
Parameters: 2 7 7 80 10 50 1000
Length:  199800

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
153406--153472	33	2.0	33	88	0	98	34	11	13	40	1.81
153426--153450	13	1.9	13	100	0	50	36	16	16	32	1.90
153519--153545	13	2.1	13	100	0	54	29	14	14	40	1.86
158892--158935	16	2.6	18	79	20	58	18	0	20	61	1.35
158892--158951	16	3.6	16	76	15	50	16	0	21	61	1.34
160790--160829	16	2.5	16	83	0	53	12	22	7	57	1.60
161036--161070	18	1.9	18	94	0	61	48	5	8	37	1.58
161809--161833	13	1.9	13	100	0	50	32	16	20	32	1.94
163674--163734	31	2.0	31	87	6	88	32	8	22	36	1.84
168756--168796	18	2.2	19	86	4	57	24	0	19	56	1.42
171400--171450	19	2.6	19	84	3	66	29	17	13	39	1.88
171499--171561	33	1.9	33	87	6	92	33	9	23	33	1.87
175881--176629	48	15.8	48	78	11	627	29	18	26	24	1.98
176232--176489	87	2.9	87	90	2	390	28	20	26	25	1.99
176320--176629	135	2.3	135	92	0	512	28	20	25	25	1.99
176456--176629	87	2.0	87	91	0	285	28	21	24	25	1.99
176651--176775	29	4.3	29	82	9	148	18	16	32	33	1.93
176789--177439	27	21.7	27	77	14	492	32	14	32	21	1.93
176964--177439	28	16.0	27	79	13	367	32	14	32	21	1.93
176697--177324	89	6.9	89	83	8	682	31	13	32	22	1.93
176692--177418	272	2.7	267	80	12	752	32	13	32	21	1.93
176883--177440	61	9.4	55	78	13	417	31	14	32	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176784--177439	238	2.7	237	83	10	784	32	14	32	21	1.92
178644--178673	16	1.9	15	93	6	51	0	0	10	90	0.47
185658--185710	21	2.7	20	85	8	72	33	16	15	33	1.90
188709--188760	27	1.9	27	84	7	70	36	13	21	28	1.91
188724--188886	76	2.2	72	82	9	184	42	6	17	33	1.74
188755--189045	155	1.9	159	82	7	380	41	8	18	31	1.80
188754--189045	78	3.7	77	78	8	270	41	8	18	31	1.80
188770--189088	155	2.1	155	81	8	364	39	10	19	30	1.84
188770--189090	78	4.1	79	75	8	266	39	9	19	31	1.84
191606--191681	31	2.5	31	93	0	125	40	14	15	28	1.87

Tables:   1   2

The End!