genome.fa.s1408.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1408
Parameters: 2 7 7 80 10 50 1000
Length:  211627

Tables:   1   2   

This is table  2  of  2  ( 159 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
146012--146036	2	12.5	2	100	0	50	52	0	0	48	1.00
148582--148608	13	2.1	13	100	0	54	85	0	0	14	0.61
151405--151438	2	17.0	2	100	0	68	50	0	0	50	1.00
157535--157600	15	4.8	14	71	19	50	45	3	1	50	1.26
157706--157738	16	2.1	16	94	5	59	51	0	6	42	1.26
157707--157755	25	2.0	25	88	8	73	53	0	4	42	1.20
164449--164496	23	2.1	23	96	0	87	31	0	0	68	0.90
165396--166010	157	3.9	155	80	7	616	45	16	9	27	1.79
165423--165992	314	1.8	314	81	5	713	45	17	9	27	1.79
167033--167057	13	1.9	13	100	0	50	32	16	16	36	1.90
167138--167164	13	2.1	13	100	0	54	29	14	14	40	1.86
173092--173117	8	3.2	8	100	0	52	15	0	23	61	1.33
173462--173502	22	2.0	20	86	13	57	31	21	4	41	1.74
174068--174112	22	2.0	22	95	0	81	35	0	31	33	1.58
174773--174840	33	2.1	33	86	2	93	33	17	13	35	1.89
176181--176629	152	2.9	152	83	4	539	50	8	8	33	1.62
176182--176653	154	3.1	152	79	10	498	50	8	8	33	1.61
177853--177889	13	2.8	13	91	0	65	32	13	13	40	1.84
178390--178414	13	1.9	13	100	0	50	36	16	8	40	1.77
185228--185271	23	1.9	23	86	9	63	29	6	22	40	1.80
188286--188344	32	1.9	30	83	13	75	59	10	10	20	1.58
188625--188650	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188605--188668	32	2.0	33	87	3	94	28	14	17	40	1.88
191196--191234	13	3.0	13	92	0	69	35	15	15	33	1.89
193140--193185	15	3.1	15	96	0	83	13	21	15	50	1.78
194968--195012	21	2.1	21	84	8	56	22	20	4	53	1.63
196891--196949	32	1.9	30	83	13	75	59	10	10	20	1.58
197230--197255	13	2.0	13	100	0	52	30	15	15	38	1.88
197210--197273	32	2.0	33	87	3	94	28	14	17	40	1.88
199672--199696	13	1.9	13	100	0	50	36	16	16	32	1.90
199766--199803	20	1.9	20	94	0	67	28	15	15	39	1.89
202212--202250	13	3.0	13	92	0	69	33	15	20	30	1.94
202425--202450	8	3.2	8	100	0	52	61	23	0	15	1.33
203356--203381	13	2.0	13	100	0	52	30	15	15	38	1.88
203441--203515	20	3.6	20	72	10	78	30	16	13	40	1.86
203420--203515	43	2.3	43	90	3	151	29	16	12	41	1.85
204067--204162	48	2.0	48	100	0	192	25	29	8	37	1.85
206003--206041	13	3.0	13	96	0	69	35	15	17	30	1.91
208120--208150	15	2.1	15	93	0	53	12	22	16	48	1.80

Tables:   1   2

The End!