Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1409
Parameters: 2 7 7 80 10 50 1000
Length:  155606

Tables:   1   2   

This is table  2  of  2  ( 184 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
99976--100002
10
2.7
10
100
0
54
92
0
7
0
0.38
99970--100002
10
3.1
11
86
8
50
90
3
6
0
0.52
100400--100566
67
2.5
67
80
7
205
42
14
15
27
1.86
102781--102850
29
2.4
29
76
21
67
45
1
0
52
1.09
104535--104564
2
15.0
2
100
0
60
50
0
0
50
1.00
105343--105376
2
17.0
2
100
0
68
50
0
0
50
1.00
105670--105719
17
2.8
18
77
16
50
58
2
2
38
1.21
106410--106443
2
17.0
2
100
0
68
50
0
0
50
1.00
106984--107103
56
2.1
55
81
3
132
29
18
16
35
1.93
107580--107627
19
2.5
20
76
10
55
33
0
0
66
0.92
107584--107639
25
2.2
26
81
12
64
39
0
1
58
1.08
107790--107820
13
2.5
13
94
5
55
61
0
0
38
0.96
107926--107962
2
18.5
2
89
10
58
45
0
2
51
1.15
107912--107955
17
2.6
17
89
3
63
43
0
0
56
0.99
107926--107962
19
1.9
19
94
0
65
45
0
2
51
1.15
108146--108192
19
2.4
19
85
3
58
29
0
2
68
1.02
108296--108367
16
4.3
16
71
20
58
68
0
0
31
0.90
108331--108371
20
2.0
22
85
9
59
68
0
0
31
0.90
108301--108371
29
2.4
29
77
13
74
66
0
0
33
0.92
108358--108406
19
2.7
18
79
14
55
53
0
0
46
1.00
108361--108404
20
2.3
19
84
4
61
54
0
0
45
0.99
109419--109495
24
3.2
24
94
0
127
23
23
23
29
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110232--110304
34
2.2
32
79
13
78
27
8
8
56
1.57
110786--110855
2
35.0
2
100
0
140
50
0
0
50
1.00
112478--112529
21
2.5
21
87
6
70
36
3
25
34
1.74
112799--112844
20
2.3
20
96
0
83
30
15
26
28
1.96
118696--118824
28
4.6
28
85
3
125
24
13
30
32
1.93
128786--128826
2
20.5
2
100
0
82
48
0
0
51
1.00
129659--129700
6
7.0
6
81
7
50
52
0
0
47
1.00
129666--129702
19
1.9
19
94
0
65
54
0
0
45
1.00
130046--130087
9
4.6
9
80
16
50
4
11
0
83
0.79
130853--130911
29
2.0
30
83
9
77
57
3
0
38
1.15
131300--131347
23
2.1
23
96
0
87
45
2
4
47
1.33
131300--131355
23
2.4
23
90
0
85
44
1
3
50
1.29
131338--131377
19
2.1
19
86
9
55
45
0
2
52
1.14
131688--131715
14
2.0
14
100
0
56
35
0
0
64
0.94
131689--131730
22
1.9
22
90
9
68
35
0
0
64
0.94
133209--133248
2
20.0
2
89
0
62
47
2
2
47
1.29
134137--134189
22
2.4
22
96
0
97
58
0
1
39
1.09
134137--134214
22
3.4
24
87
3
83
55
3
1
39
1.26
134181--134234
24
2.4
21
79
17
56
50
12
0
37
1.41
134412--134446
2
18.0
2
94
5
63
48
0
0
51
1.00
134583--134646
3
21.3
3
90
6
103
34
0
0
65
0.93
135664--135721
20
2.9
20
82
10
57
46
1
5
46
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
136446--136489
22
1.9
23
86
9
63
63
0
0
36
0.95
137269--137351
28
3.0
27
77
18
80
34
2
0
62
1.08
137272--137329
29
2.0
29
84
15
77
34
0
0
65
0.93
137450--137502
14
3.5
15
78
16
56
64
0
0
35
0.94
138371--138463
20
5.0
19
73
17
72
61
0
4
34
1.16
138963--139020
12
4.8
12
75
8
55
70
0
0
29
0.87
138965--139021
18
3.2
17
85
7
78
70
0
0
29
0.88
138969--139021
24
2.2
25
90
6
83
71
0
0
28
0.86
139219--139269
22
2.3
23
86
10
79
45
0
0
54
0.99
139243--139287
12
3.6
13
77
16
51
42
0
0
57
0.98
139227--139272
21
2.2
21
92
7
76
41
0
0
58
0.98
142997--143034
2
19.0
2
100
0
76
50
0
0
50
1.00
143429--143474
23
2.0
23
95
4
85
54
0
4
41
1.20
143607--143644
20
1.9
20
89
10
60
55
5
5
34
1.45
144523--144562
20
2.0
21
90
5
64
60
5
0
35
1.19
149985--150062
24
3.3
22
79
15
75
38
0
1
60
1.05
149991--150041
15
3.4
15
75
5
50
39
0
0
60
0.97
150116--150196
24
3.3
25
80
10
78
60
1
1
37
1.13
150116--150174
12
4.8
12
73
22
50
61
1
0
37
1.07
150129--150177
12
3.8
13
78
8
55
63
2
0
34
1.06

Tables:   1   2

The End!