genome.fa.s1421.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1421
Parameters: 2 7 7 80 10 50 1000
Length:  52806

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5993--6111	42	2.8	42	88	5	177	9	46	2	42	1.49
6026--6101	12	6.9	11	75	15	52	9	48	2	39	1.49
6017--6102	24	3.8	24	72	17	85	10	45	2	41	1.51
14530--14562	17	1.9	17	100	0	66	36	6	9	48	1.60
15260--15326	33	2.0	33	100	0	134	46	17	8	26	1.78
15376--15492	58	2.0	58	90	3	182	25	23	20	29	1.99
15813--15901	29	3.1	29	66	18	76	47	16	13	22	1.82
15745--16550	58	13.9	57	75	7	601	44	17	12	24	1.84
15763--16550	115	6.8	115	79	6	637	44	18	12	24	1.83
16122--16164	9	4.4	10	77	16	54	58	11	11	18	1.63
16122--16164	20	2.2	19	88	12	61	58	11	11	18	1.63
16696--17084	208	1.9	208	89	2	611	38	19	10	31	1.85
19760--19811	20	2.5	21	90	3	79	38	15	19	26	1.91
26683--26801	42	2.8	42	92	0	193	8	46	2	42	1.47
26716--26791	12	6.9	11	75	15	52	9	48	2	39	1.49
26707--26792	24	3.8	24	72	17	85	10	45	2	41	1.51
26698--26768	18	3.6	18	69	20	52	9	43	2	43	1.52
29636--29681	13	3.5	13	80	19	51	76	4	2	17	1.06
30977--31048	13	5.7	12	76	14	56	33	15	13	37	1.87
30970--31059	13	7.0	12	75	17	51	34	15	14	35	1.88
30970--31059	27	3.5	24	77	17	74	34	15	14	35	1.88
31625--31805	31	5.8	31	83	5	222	28	24	23	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32714--32743	15	2.0	15	100	0	60	73	6	13	6	1.24
33492--33623	42	3.1	42	85	2	176	43	2	43	9	1.50
33516--33582	21	3.2	21	66	16	57	43	2	41	11	1.57
42091--42376	100	2.8	102	79	4	283	36	10	22	30	1.89
42022--42376	103	3.5	101	76	7	306	36	11	23	29	1.90
43990--45534	777	2.0	775	87	2	2213	30	14	24	31	1.94
46226--46357	52	2.5	52	85	2	176	36	18	23	21	1.95
46375--46481	51	2.1	51	85	5	144	33	15	24	26	1.95
46308--46861	52	10.7	52	74	6	313	34	14	22	27	1.94
46323--46841	155	3.3	156	79	2	438	34	14	22	28	1.94
46308--46861	104	5.4	103	73	5	359	34	14	22	27	1.94
47076--47196	32	3.8	31	79	4	116	27	18	28	26	1.98
47244--47309	30	2.1	31	91	5	107	24	12	31	31	1.92
47164--47453	123	2.4	121	80	9	297	26	15	27	31	1.96
47298--47459	28	5.4	28	76	13	144	25	15	29	29	1.96
47270--47464	93	2.2	87	84	6	246	25	15	29	29	1.96
47298--47459	29	5.4	29	77	10	137	25	15	29	29	1.96
50112--50154	21	2.1	20	95	4	77	23	20	16	39	1.92
50190--50243	20	2.7	20	91	2	81	38	9	16	35	1.81
50314--50446	51	2.6	53	85	4	182	27	14	12	45	1.81
51295--51417	50	2.5	51	92	6	207	33	16	8	42	1.77

Tables:   1

The End!