genome.fa.s1422.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1422
Parameters: 2 7 7 80 10 50 1000
Length:  293460

Tables:   1   2   3   

This is table  3  of  3  ( 276 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
260806--260872	17	3.8	17	75	11	64	62	0	0	37	0.95
264573--264637	29	2.3	27	80	17	71	61	3	1	33	1.21
264865--264950	5	17.8	5	70	20	58	55	1	2	40	1.20
264901--264947	19	2.5	19	86	10	69	53	0	4	42	1.20
265623--265684	27	2.2	28	75	8	65	50	3	1	45	1.27
266530--266561	17	2.0	17	88	11	50	62	0	0	37	0.95
267911--267945	2	18.0	2	94	5	63	48	0	0	51	1.00
271315--271374	22	2.7	22	79	7	59	5	16	1	76	1.04
271332--271378	11	4.3	11	86	0	58	2	17	0	80	0.80
272743--273227	85	5.8	82	78	6	377	25	15	27	31	1.96
272786--273233	113	4.0	111	78	5	361	25	16	27	30	1.96
272755--273223	141	3.3	140	77	5	331	24	16	27	31	1.96
272713--273230	28	18.4	29	76	8	362	25	15	26	31	1.96
273214--273595	55	6.9	55	87	3	511	30	14	30	23	1.95
273214--273595	27	13.9	28	88	3	501	30	14	30	23	1.95
278903--278960	27	2.1	27	100	0	116	29	13	34	22	1.93
280494--280589	1	96.0	1	73	0	75	86	9	3	1	0.73
280494--280589	11	9.5	10	76	13	90	86	9	3	1	0.73
280497--280582	18	4.8	18	89	0	127	86	10	2	1	0.73
281728--282590	55	15.0	55	79	11	853	26	27	20	25	1.99
281663--282599	116	8.2	115	84	7	1103	26	27	20	25	1.99
283396--283458	19	3.7	18	76	24	73	33	12	17	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283415--283439	13	1.9	13	100	0	50	36	16	16	32	1.90
283394--283466	32	2.3	32	97	0	137	34	12	17	35	1.88
283511--283536	13	2.0	13	100	0	52	30	15	15	38	1.88
285876--286010	52	2.6	52	82	5	175	31	26	11	31	1.91
286024--286205	79	2.3	79	83	3	215	23	27	16	32	1.96
287980--288035	22	2.6	21	80	5	58	1	21	1	75	0.99
287969--288042	21	3.4	21	77	7	67	2	18	1	77	0.97
289415--289462	22	2.3	22	85	7	64	79	2	10	8	1.02
288694--290442	912	1.9	912	93	4	2958	36	19	14	29	1.92
291711--292464	28	27.2	28	85	3	713	26	30	13	29	1.94
291721--292464	83	9.0	83	83	3	675	26	30	13	29	1.94
291711--292308	111	5.4	111	83	2	677	25	30	13	30	1.93
291711--292805	28	39.1	28	77	10	440	28	28	14	28	1.95
292649--292760	27	4.1	27	78	7	109	33	25	16	23	1.96

Tables:   1   2   3

The End!