genome.fa.s1431.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1431
Parameters: 2 7 7 80 10 50 1000
Length:  237145

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
182595--182675	42	1.9	42	89	0	126	12	43	0	44	1.42
182629--182663	12	2.9	12	84	16	54	11	48	0	40	1.39
182613--182663	24	2.2	22	86	6	66	11	43	0	45	1.40
182624--182694	33	2.2	33	92	0	115	15	43	0	40	1.47
184597--184657	9	6.1	9	74	20	50	40	1	40	16	1.58
184580--184686	42	2.5	42	87	0	160	40	1	43	14	1.55
189997--190045	9	5.8	9	72	13	50	44	0	40	14	1.45
189997--190045	18	2.9	17	79	11	57	44	0	40	14	1.45
189964--190054	42	2.1	44	85	4	123	46	1	40	12	1.48
190003--190077	33	2.2	33	85	2	96	42	0	44	13	1.43
193943--194461	262	2.0	262	92	1	871	33	14	28	23	1.94
195829--195914	24	3.8	24	70	17	76	40	3	45	10	1.55
195820--195938	42	2.8	42	90	0	184	42	3	46	8	1.51
200515--200553	15	2.6	14	80	11	51	82	2	12	2	0.89
201301--201376	12	6.9	11	75	15	52	39	2	48	9	1.49
201291--201409	42	2.8	42	91	2	195	42	2	46	8	1.47
208986--209057	12	6.5	11	78	16	62	41	0	44	13	1.44
209006--209066	9	7.1	9	76	10	65	45	0	40	13	1.43
208976--209088	42	2.7	42	91	0	172	45	0	42	12	1.42
210698--210826	42	3.1	42	89	1	197	44	1	44	8	1.43
210774--210823	18	2.8	18	81	6	57	44	2	46	8	1.44
215789--215828	21	1.9	21	85	10	55	50	0	42	7	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
216410--216469	18	3.2	18	77	13	75	20	25	5	50	1.68
216407--216471	21	3.2	21	73	18	75	20	26	4	49	1.68
221509--221560	19	2.7	20	87	6	79	28	13	15	42	1.85
224100--224138	13	3.0	13	84	0	60	38	15	12	33	1.85
230281--230332	19	2.7	20	87	6	79	28	13	15	42	1.85
232715--232753	15	2.6	14	80	11	51	82	2	12	2	0.89
233501--233576	12	6.9	11	75	15	52	39	2	48	9	1.49
233491--233609	42	2.8	42	91	2	195	42	2	46	8	1.47

Tables:   1   2

The End!