genome.fa.s1437.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold1437
Parameters: 2 7 7 80 10 50 1000
Length:  151910

Tables:   1   2   

This is table  2  of  2  ( 148 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
131441--131892	101	4.7	97	75	12	298	22	31	13	32	1.93
131502--131755	132	1.9	131	85	5	352	22	31	14	32	1.93
131790--131892	27	3.5	27	78	10	80	23	32	13	31	1.93
131655--131855	67	3.0	69	77	11	179	18	33	12	34	1.89
131475--131848	164	2.3	162	81	7	422	21	31	14	32	1.93
131882--131953	33	2.3	33	85	7	96	30	34	16	18	1.93
131946--132849	49	18.6	49	81	9	935	25	25	18	30	1.98
131946--132800	92	8.9	93	85	8	947	25	25	18	30	1.98
131946--132796	243	3.5	243	92	2	1337	25	25	18	30	1.98
132617--132853	53	4.7	51	82	6	250	25	24	16	32	1.96
133680--133704	13	1.9	13	100	0	50	32	16	16	36	1.90
133713--133841	52	2.5	52	93	0	222	34	17	18	29	1.94
137430--137505	1	76.0	1	72	0	53	85	7	5	1	0.79
137431--137504	8	8.9	8	78	20	64	85	8	5	1	0.80
137430--137503	24	3.2	22	81	11	78	85	8	5	1	0.80
137439--137504	25	2.6	26	81	13	68	84	7	6	1	0.82
137430--137505	34	2.2	34	86	4	109	85	7	5	1	0.79
137430--137508	10	8.0	10	77	6	72	84	7	6	1	0.82
138738--138823	26	3.2	26	65	20	68	25	30	20	23	1.99
138565--139044	165	2.8	171	81	10	495	26	28	20	24	1.99
138565--138933	55	6.6	55	86	7	436	27	28	20	23	1.99
140217--140266	25	2.0	25	100	0	100	48	16	8	28	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141199--141238	20	2.1	19	85	4	53	67	2	7	22	1.28
141300--141335	18	2.0	18	88	0	54	38	0	0	61	0.96
142729--142786	31	1.9	31	92	3	100	56	1	5	36	1.32
149447--149504	23	2.6	22	83	5	73	67	0	3	29	1.07
150473--150516	13	3.6	13	85	8	58	54	0	0	45	0.99
150507--150549	23	1.9	23	81	13	54	44	0	6	48	1.29

Tables:   1   2

The End!